Functional clusters

Information

  • Type Gene Ontology
  • Description membrane

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 3 CH_aag_174 9 11 0.000777992
Arabidopsis thaliana Chr4 3 CH_ath_105 30 53 0.00000000441628
Arabidopsis thaliana Chr4 3 CH_ath_165 30 59 0.000000188827
Arabidopsis thaliana Chr5 3 CH_ath_370 24 48 0.0000446021
Arabidopsis thaliana Chr4 3 CH_ath_532 30 77 0.000299622
Arabidopsis thaliana Chr5 3 CH_ath_614 29 75 0.000936672
Camellia sinensis var. sinensis Chr10 3 CH_camsi_837 16 26 0.000833974
Capsicum annuum PGAv.1.6.scaffold257 3 CH_can_166 19 25 0.000000159364
Coffea canephora chr10 3 CH_ccan_135 11 62 0.00000308882
Coffea canephora chr7 3 CH_ccan_282 9 49 0.000185015
Carpinus fangiana Cfa01 3 CH_cfa_294 12 15 0.000397014
Chenopodium quinoa C_Quinoa_Scaffold_4250 3 CH_cqu_335 11 11 0.0000586847
Chenopodium quinoa C_Quinoa_Scaffold_4250 3 CH_cqu_494 23 43 0.000474885
Erigeron canadensis Conyza_canadensis_scaffold:8 3 CH_eca_469 10 13 0.000854624
Gossypium hirsutum A08 3 CH_ghi_316 29 54 0.00000404211
Gossypium hirsutum D08 3 CH_ghi_411 30 62 0.000054171
Gossypium raimondii Chr04 3 CH_gra_130 30 51 0.000000202804
Helianthus annuus HanXRQChr09 3 CH_han_569 28 64 0.000210186
Lactuca sativa Lsat_1_v8_lg_3 3 CH_lsa_353 14 18 0.000103479
Medicago truncatula chr3 3 CH_mtr_649 25 67 0.000321391
Rhododendron simsii chr13 3 CH_rsi_442 28 64 0.000324548
Salvia bowleyana GWHASIU00000002 3 CH_sbo_306 27 73 0.0000371727
Salvia bowleyana GWHASIU00000006 3 CH_sbo_335 28 79 0.0000566661
Salvia bowleyana GWHASIU00000001 3 CH_sbo_390 14 23 0.000166554
Salvia bowleyana GWHASIU00000001 3 CH_sbo_404 26 74 0.000269701
Salvia bowleyana GWHASIU00000004 3 CH_sbo_466 19 44 0.000589075
Sequoiadendron giganteum chr1 3 CH_sgi_1070 20 39 0.000127234
Sequoiadendron giganteum chr10 3 CH_sgi_1186 9 9 0.000231057
Sequoiadendron giganteum chr1 3 CH_sgi_1374 17 32 0.000978349
Sapria himalayana scaffold9_16683904 3 CH_shi_184 15 52 0.000133806
Solanum lycopersicum SL4.0ch02 3 CH_sly_511 19 23 0.000415472
Solanum pennellii Spenn-ch03 3 CH_spe_401 21 51 0.000382253
Solanum pennellii Spenn-ch02 3 CH_spe_79 19 25 0.000000000659695
Selenicereus undatus Scaffold_33679 3 CH_sun_210 30 77 0.000552178
Vitis vinifera chr9 3 CH_vvi_216 17 23 0.00000970516
Anthoceros agrestis Sc2ySwM_344 4 CH_aag_174 9 11 0.000777992
Arabidopsis thaliana Chr4 4 CH_ath_105 30 53 0.00000000441628
Arabidopsis thaliana Chr4 4 CH_ath_165 30 59 0.000000188827
Arabidopsis thaliana Chr5 4 CH_ath_370 24 48 0.0000446021
Arabidopsis thaliana Chr4 4 CH_ath_532 30 77 0.000299622
Arabidopsis thaliana Chr5 4 CH_ath_614 29 75 0.000936672
Camellia sinensis var. sinensis Chr10 4 CH_camsi_837 16 26 0.000833974
Capsicum annuum PGAv.1.6.scaffold257 4 CH_can_166 19 25 0.000000159364
Coffea canephora chr10 4 CH_ccan_135 11 62 0.00000308882
Coffea canephora chr7 4 CH_ccan_282 9 49 0.000185015
Carpinus fangiana Cfa01 4 CH_cfa_294 12 15 0.000397014
Chenopodium quinoa C_Quinoa_Scaffold_4250 4 CH_cqu_335 11 11 0.0000586847
Chenopodium quinoa C_Quinoa_Scaffold_4250 4 CH_cqu_494 23 43 0.000474885
Erigeron canadensis Conyza_canadensis_scaffold:8 4 CH_eca_469 10 13 0.000854624
Gossypium hirsutum A08 4 CH_ghi_316 29 54 0.00000404211
Gossypium hirsutum D08 4 CH_ghi_411 30 62 0.000054171
Gossypium raimondii Chr04 4 CH_gra_130 30 51 0.000000202804
Helianthus annuus HanXRQChr09 4 CH_han_569 28 64 0.000210186
Lactuca sativa Lsat_1_v8_lg_3 4 CH_lsa_353 14 18 0.000103479
Medicago truncatula chr3 4 CH_mtr_649 25 67 0.000321391
Rhododendron simsii chr13 4 CH_rsi_442 28 64 0.000324548
Salvia bowleyana GWHASIU00000002 4 CH_sbo_306 27 73 0.0000371727
Salvia bowleyana GWHASIU00000006 4 CH_sbo_335 28 79 0.0000566661
Salvia bowleyana GWHASIU00000001 4 CH_sbo_390 14 23 0.000166554
Salvia bowleyana GWHASIU00000001 4 CH_sbo_404 26 74 0.000269701
Salvia bowleyana GWHASIU00000004 4 CH_sbo_466 19 44 0.000589075
Sequoiadendron giganteum chr1 4 CH_sgi_1070 20 39 0.000127234
Sequoiadendron giganteum chr10 4 CH_sgi_1186 9 9 0.000231057
Sequoiadendron giganteum chr1 4 CH_sgi_1374 17 32 0.000978349
Sapria himalayana scaffold9_16683904 4 CH_shi_184 15 52 0.000133806
Solanum lycopersicum SL4.0ch02 4 CH_sly_511 19 23 0.000415472
Solanum pennellii Spenn-ch03 4 CH_spe_401 21 51 0.000382253
Solanum pennellii Spenn-ch02 4 CH_spe_79 19 25 0.000000000659695
Selenicereus undatus Scaffold_33679 4 CH_sun_210 30 77 0.000552178
Vitis vinifera chr9 4 CH_vvi_216 17 23 0.00000970516

Available child term results

Ontology identifier Description Number of clusters
GO:0000139 Golgi membrane 10
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain 34
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 20
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 22
GO:0000306 extrinsic component of vacuolar membrane 4
GO:0000421 autophagosome membrane 4
GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex 10
GO:0000813 ESCRT I complex 2
GO:0000814 ESCRT II complex 20
GO:0005637 nuclear inner membrane 4
GO:0005639 integral component of nuclear inner membrane 2
GO:0005640 nuclear outer membrane 2
GO:0005741 mitochondrial outer membrane 2
GO:0005742 mitochondrial outer membrane translocase complex 8
GO:0005743 mitochondrial inner membrane 16
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex 12
GO:0005747 mitochondrial respiratory chain complex I 6
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) 2
GO:0005750 mitochondrial respiratory chain complex III 2
GO:0005753 mitochondrial proton-transporting ATP synthase complex 2
GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core 6
GO:0005774 vacuolar membrane 14
GO:0005779 integral component of peroxisomal membrane 2
GO:0005784 Sec61 translocon complex 8
GO:0005785 signal recognition particle receptor complex 12
GO:0005787 signal peptidase complex 18
GO:0005789 endoplasmic reticulum membrane 14
GO:0005886 plasma membrane 36
GO:0005887 integral component of plasma membrane 2
GO:0005901 caveola 8
GO:0008250 oligosaccharyltransferase complex 6
GO:0009511 plasmodesmatal endoplasmic reticulum 6
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009521 photosystem 8
GO:0009522 photosystem I 8
GO:0009523 photosystem II 14
GO:0009535 chloroplast thylakoid membrane 46
GO:0009538 photosystem I reaction center 4
GO:0009539 photosystem II reaction center 16
GO:0009654 photosystem II oxygen evolving complex 8
GO:0009706 chloroplast inner membrane 10
GO:0009707 chloroplast outer membrane 4
GO:0009782 photosystem I antenna complex 2
GO:0009783 photosystem II antenna complex 6
GO:0009897 external side of plasma membrane 2
GO:0009921 auxin efflux carrier complex 6
GO:0009923 fatty acid elongase complex 6
GO:0009925 basal plasma membrane 4
GO:0010006 Toc complex 2
GO:0010008 endosome membrane 10
GO:0016021 integral component of membrane 154
GO:0016324 apical plasma membrane 2
GO:0016328 lateral plasma membrane 2
GO:0016469 proton-transporting two-sector ATPase complex 2
GO:0016471 vacuolar proton-transporting V-type ATPase complex 4
GO:0017059 serine C-palmitoyltransferase complex 2
GO:0019897 extrinsic component of plasma membrane 32
GO:0019898 extrinsic component of membrane 12
GO:0030093 chloroplast photosystem I 2
GO:0030095 chloroplast photosystem II 4
GO:0030117 membrane coat 18
GO:0030121 AP-1 adaptor complex 4
GO:0030122 AP-2 adaptor complex 6
GO:0030123 AP-3 adaptor complex 16
GO:0030126 COPI vesicle coat 8
GO:0030127 COPII vesicle coat 16
GO:0030132 clathrin coat of coated pit 8
GO:0030176 integral component of endoplasmic reticulum membrane 6
GO:0030906 retromer, cargo-selective complex 8
GO:0031090 organelle membrane 4
GO:0031201 SNARE complex 6
GO:0031224 intrinsic component of membrane 18
GO:0031225 anchored component of membrane 84
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane 4
GO:0031303 integral component of endosome membrane 4
GO:0031304 intrinsic component of mitochondrial inner membrane 2
GO:0031307 integral component of mitochondrial outer membrane 6
GO:0031313 extrinsic component of endosome membrane 6
GO:0031314 extrinsic component of mitochondrial inner membrane 52
GO:0031357 integral component of chloroplast inner membrane 12
GO:0031359 integral component of chloroplast outer membrane 2
GO:0031897 Tic complex 10
GO:0031966 mitochondrial membrane 4
GO:0032578 aleurone grain membrane 2
GO:0032585 multivesicular body membrane 2
GO:0032586 protein storage vacuole membrane 2
GO:0032588 trans-Golgi network membrane 2
GO:0032592 integral component of mitochondrial membrane 4
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 4
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 2
GO:0033179 proton-transporting V-type ATPase, V0 domain 24
GO:0034357 photosynthetic membrane 26
GO:0034705 potassium channel complex 4
GO:0034998 oligosaccharyltransferase I complex 2
GO:0035451 extrinsic component of stromal side of plastid thylakoid membrane 2
GO:0035452 extrinsic component of plastid membrane 4
GO:0042406 extrinsic component of endoplasmic reticulum membrane 2
GO:0042651 thylakoid membrane 2
GO:0042720 mitochondrial inner membrane peptidase complex 8
GO:0042721 TIM22 mitochondrial import inner membrane insertion complex 20
GO:0042765 GPI-anchor transamidase complex 4
GO:0043190 ATP-binding cassette (ABC) transporter complex 8
GO:0044853 plasma membrane raft 16
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 34
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 12
GO:0045271 respiratory chain complex I 6
GO:0045273 respiratory chain complex II 2
GO:0046658 anchored component of plasma membrane 22
GO:0070772 PAS complex 16
GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane 4
GO:0072546 EMC complex 20
GO:0098588 bounding membrane of organelle 2
GO:0098796 membrane protein complex 8
GO:0098800 inner mitochondrial membrane protein complex 4
GO:1902495 transmembrane transporter complex 2
GO:1990578 perinuclear endoplasmic reticulum membrane 46

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001