Functional clusters
Information
- Type Gene Ontology
- Description integral component of membrane
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-9 | 3 | CH_aar_86 | 10 | 14 | 0.000000313954 |
| Acer truncatum | chr11 | 3 | CH_acertr_43 | 11 | 12 | 0.0000000000131558 |
| Acer truncatum | chr6 | 3 | CH_acertr_474 | 9 | 23 | 0.00059256 |
| Aquilegia oxysepala | CHR07 | 3 | CH_aox_128 | 9 | 15 | 0.00000856922 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 3 | CH_arhy_710 | 6 | 7 | 0.000919053 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_407 | 23 | 65 | 0.0000779732 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_444 | 21 | 56 | 0.000120135 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_82 | 26 | 52 | 0.000000000367987 |
| Amborella trichopoda | AmTr_v1.0_scaffold00018 | 3 | CH_atr_137 | 7 | 10 | 0.00000322657 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 3 | CH_atr_274 | 6 | 8 | 0.000384204 |
| Amborella trichopoda | AmTr_v1.0_scaffold00038 | 3 | CH_atr_275 | 6 | 8 | 0.000384204 |
| Amborella trichopoda | AmTr_v1.0_scaffold00055 | 3 | CH_atr_61 | 13 | 25 | 0.0000000008448 |
| Amborella trichopoda | AmTr_v1.0_scaffold00131 | 3 | CH_atr_78 | 8 | 8 | 0.0000000118507 |
| Brassica carinata | ChrB01 | 3 | CH_bca_339 | 15 | 49 | 0.00000138151 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 3 | CH_bvu_155 | 6 | 6 | 0.0000399022 |
| Camellia sinensis var. sinensis | Chr9 | 3 | CH_camsi_203 | 12 | 21 | 0.0000000140201 |
| Camellia sinensis var. sinensis | Chr1 | 3 | CH_camsi_305 | 8 | 9 | 0.000000490941 |
| Camellia sinensis var. sinensis | Chr3 | 3 | CH_camsi_528 | 16 | 72 | 0.0000505974 |
| Camellia sinensis var. sinensis | Chr2 | 3 | CH_camsi_717 | 6 | 7 | 0.000360271 |
| Cannabis sativa | NC_044377.1 | 3 | CH_cansat_325 | 5 | 5 | 0.000562805 |
| Corylus avellana | 11 | 3 | CH_cav_346 | 6 | 7 | 0.000238408 |
| Coffea canephora | chr7 | 3 | CH_ccan_136 | 7 | 49 | 0.00000333544 |
| Citrus clementina | scaffold_1 | 3 | CH_ccl_285 | 6 | 6 | 0.000071103 |
| Cardamine hirsuta | Chr5 | 3 | CH_chi_160 | 8 | 10 | 0.00000354718 |
| Cardamine hirsuta | Chr8 | 3 | CH_chi_213 | 6 | 6 | 0.0000647835 |
| Capsella rubella | scaffold_5 | 3 | CH_cru_199 | 13 | 41 | 0.0000380881 |
| Cucumis sativus L. | chr6 | 3 | CH_csa_147 | 7 | 8 | 0.00001041 |
| Daucus carota | DCARv2_Chr9 | 3 | CH_dca_81 | 27 | 35 | 0.0000000072044 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 3 | CH_eca_351 | 5 | 5 | 0.000247151 |
| Eucalyptus grandis | Chr10 | 3 | CH_egr_246 | 11 | 11 | 0.00000000000495841 |
| Eucalyptus grandis | Chr11 | 3 | CH_egr_558 | 7 | 7 | 0.00000288046 |
| Eucalyptus grandis | Chr06 | 3 | CH_egr_716 | 6 | 6 | 0.0000793684 |
| Eucalyptus grandis | Chr09 | 3 | CH_egr_844 | 6 | 7 | 0.000538279 |
| Eutrema salsugineum | scaffold_14 | 3 | CH_esa_158 | 6 | 6 | 0.0000832223 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_148 | 7 | 7 | 0.000000463026 |
| Gossypium hirsutum | A05 | 3 | CH_ghi_511 | 6 | 6 | 0.000235836 |
| Glycine max | Gm06 | 3 | CH_gma_232 | 7 | 7 | 0.00000485046 |
| Glycine max | Gm04 | 3 | CH_gma_342 | 6 | 6 | 0.000131869 |
| Lupinus albus | Lalb_Chr19 | 3 | CH_lal_275 | 13 | 13 | 0.000139565 |
| Magnolia biondii | Chr14 | 3 | CH_mbi_373 | 7 | 10 | 0.0000252438 |
| Magnolia biondii | Chr08 | 3 | CH_mbi_64 | 20 | 62 | 0.000000000000826708 |
| Malus domestica | Chr10 | 3 | CH_mdo_307 | 13 | 38 | 0.00000308553 |
| Malus domestica | Chr08 | 3 | CH_mdo_451 | 9 | 19 | 0.0000921694 |
| Malus domestica | Chr00 | 3 | CH_mdo_574 | 6 | 7 | 0.000309274 |
| Marchantia polymorpha | scaffold_185 | 3 | CH_mpo_131 | 6 | 8 | 0.000916909 |
| Marchantia polymorpha | scaffold_8 | 3 | CH_mpo_26 | 12 | 19 | 0.00000000254015 |
| Marchantia polymorpha | scaffold_87 | 3 | CH_mpo_93 | 6 | 7 | 0.000236341 |
| Medicago truncatula | chr6 | 3 | CH_mtr_244 | 16 | 55 | 0.0000000192821 |
| Medicago truncatula | chr5 | 3 | CH_mtr_453 | 15 | 73 | 0.0000235033 |
| Nelumbo nucifera | scaffold029 | 3 | CH_nnu_302 | 5 | 5 | 0.000595687 |
| Nelumbo nucifera | chr4 | 3 | CH_nnu_303 | 5 | 5 | 0.000595687 |
| Oryza sativa ssp. japonica | chr05 | 3 | CH_osa_403 | 12 | 14 | 0.000354299 |
| Petunia axillaris | Peaxi162Scf00516 | 3 | CH_pax_120 | 7 | 7 | 0.00000107387 |
| Punica granatum | NC_045130.1 | 3 | CH_pgr_298 | 11 | 11 | 0.000162112 |
| Prunus persica | Pp01 | 3 | CH_ppe_187 | 8 | 8 | 0.0000000569641 |
| Pisum sativum | chr2LG1 | 3 | CH_psa_202 | 8 | 14 | 0.0000345165 |
| Papaver somniferum | NC_039364.1 | 3 | CH_pso_370 | 6 | 6 | 0.00000974562 |
| Phaseolus vulgaris | Chr09 | 3 | CH_pvu_350 | 6 | 7 | 0.000647918 |
| Quercus lobata | 4 | 3 | CH_qlo_451 | 26 | 34 | 0.000000189616 |
| Quercus lobata | 10 | 3 | CH_qlo_694 | 29 | 47 | 0.0000453837 |
| Quercus lobata | 10 | 3 | CH_qlo_997 | 18 | 24 | 0.000676871 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_78 | 14 | 17 | 9.72841e-16 |
| Salvia bowleyana | GWHASIU00000001 | 3 | CH_sbo_334 | 6 | 7 | 0.0000524297 |
| Salvia bowleyana | GWHASIU00000008 | 3 | CH_sbo_434 | 5 | 5 | 0.000324327 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_1179 | 6 | 7 | 0.000199127 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_317 | 12 | 15 | 0.00000000000844518 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_556 | 9 | 11 | 0.0000000401215 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_730 | 9 | 14 | 0.00000134632 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_825 | 7 | 8 | 0.00000677654 |
| Sequoiadendron giganteum | HRSCAF_1 | 3 | CH_sgi_905 | 6 | 6 | 0.000029193 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_906 | 7 | 9 | 0.0000296997 |
| Solanum lycopersicum | SL4.0ch02 | 3 | CH_sly_385 | 16 | 21 | 0.000103684 |
| Solanum pennellii | Spenn-ch03 | 3 | CH_spe_137 | 7 | 7 | 0.000000127972 |
| Theobroma cacao | Chromosome_4 | 3 | CH_tca_247 | 7 | 9 | 0.0000416708 |
| Vigna mungo | CM024074.1 | 3 | CH_vmu_260 | 6 | 7 | 0.000268927 |
| Vanilla planifolia | CM028161.1 | 3 | CH_vpl_96 | 10 | 16 | 0.000000464379 |
| Vitis vinifera | chr4 | 3 | CH_vvi_65 | 12 | 13 | 0.000000000000910666 |
| Aethionema arabicum | LG-9 | 4 | CH_aar_86 | 10 | 14 | 0.000000313954 |
| Acer truncatum | chr11 | 4 | CH_acertr_43 | 11 | 12 | 0.0000000000131558 |
| Acer truncatum | chr6 | 4 | CH_acertr_474 | 9 | 23 | 0.00059256 |
| Aquilegia oxysepala | CHR07 | 4 | CH_aox_128 | 9 | 15 | 0.00000856922 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 4 | CH_arhy_710 | 6 | 7 | 0.000919053 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_407 | 23 | 65 | 0.0000779732 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_444 | 21 | 56 | 0.000120135 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_82 | 26 | 52 | 0.000000000367987 |
| Amborella trichopoda | AmTr_v1.0_scaffold00018 | 4 | CH_atr_137 | 7 | 10 | 0.00000322657 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 4 | CH_atr_274 | 6 | 8 | 0.000384204 |
| Amborella trichopoda | AmTr_v1.0_scaffold00038 | 4 | CH_atr_275 | 6 | 8 | 0.000384204 |
| Amborella trichopoda | AmTr_v1.0_scaffold00055 | 4 | CH_atr_61 | 13 | 25 | 0.0000000008448 |
| Amborella trichopoda | AmTr_v1.0_scaffold00131 | 4 | CH_atr_78 | 8 | 8 | 0.0000000118507 |
| Brassica carinata | ChrB01 | 4 | CH_bca_339 | 15 | 49 | 0.00000138151 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 4 | CH_bvu_155 | 6 | 6 | 0.0000399022 |
| Camellia sinensis var. sinensis | Chr9 | 4 | CH_camsi_203 | 12 | 21 | 0.0000000140201 |
| Camellia sinensis var. sinensis | Chr1 | 4 | CH_camsi_305 | 8 | 9 | 0.000000490941 |
| Camellia sinensis var. sinensis | Chr3 | 4 | CH_camsi_528 | 16 | 72 | 0.0000505974 |
| Camellia sinensis var. sinensis | Chr2 | 4 | CH_camsi_717 | 6 | 7 | 0.000360271 |
| Cannabis sativa | NC_044377.1 | 4 | CH_cansat_325 | 5 | 5 | 0.000562805 |
| Corylus avellana | 11 | 4 | CH_cav_346 | 6 | 7 | 0.000238408 |
| Coffea canephora | chr7 | 4 | CH_ccan_136 | 7 | 49 | 0.00000333544 |
| Citrus clementina | scaffold_1 | 4 | CH_ccl_285 | 6 | 6 | 0.000071103 |
| Cardamine hirsuta | Chr5 | 4 | CH_chi_160 | 8 | 10 | 0.00000354718 |
| Cardamine hirsuta | Chr8 | 4 | CH_chi_213 | 6 | 6 | 0.0000647835 |
| Capsella rubella | scaffold_5 | 4 | CH_cru_199 | 13 | 41 | 0.0000380881 |
| Cucumis sativus L. | chr6 | 4 | CH_csa_147 | 7 | 8 | 0.00001041 |
| Daucus carota | DCARv2_Chr9 | 4 | CH_dca_81 | 27 | 35 | 0.0000000072044 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 4 | CH_eca_351 | 5 | 5 | 0.000247151 |
| Eucalyptus grandis | Chr10 | 4 | CH_egr_246 | 11 | 11 | 0.00000000000495841 |
| Eucalyptus grandis | Chr11 | 4 | CH_egr_558 | 7 | 7 | 0.00000288046 |
| Eucalyptus grandis | Chr06 | 4 | CH_egr_716 | 6 | 6 | 0.0000793684 |
| Eucalyptus grandis | Chr09 | 4 | CH_egr_844 | 6 | 7 | 0.000538279 |
| Eutrema salsugineum | scaffold_14 | 4 | CH_esa_158 | 6 | 6 | 0.0000832223 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_148 | 7 | 7 | 0.000000463026 |
| Gossypium hirsutum | A05 | 4 | CH_ghi_511 | 6 | 6 | 0.000235836 |
| Glycine max | Gm06 | 4 | CH_gma_232 | 7 | 7 | 0.00000485046 |
| Glycine max | Gm04 | 4 | CH_gma_342 | 6 | 6 | 0.000131869 |
| Lupinus albus | Lalb_Chr19 | 4 | CH_lal_275 | 13 | 13 | 0.000139565 |
| Magnolia biondii | Chr14 | 4 | CH_mbi_373 | 7 | 10 | 0.0000252438 |
| Magnolia biondii | Chr08 | 4 | CH_mbi_64 | 20 | 62 | 0.000000000000826708 |
| Malus domestica | Chr10 | 4 | CH_mdo_307 | 13 | 38 | 0.00000308553 |
| Malus domestica | Chr08 | 4 | CH_mdo_451 | 9 | 19 | 0.0000921694 |
| Malus domestica | Chr00 | 4 | CH_mdo_574 | 6 | 7 | 0.000309274 |
| Marchantia polymorpha | scaffold_185 | 4 | CH_mpo_131 | 6 | 8 | 0.000916909 |
| Marchantia polymorpha | scaffold_8 | 4 | CH_mpo_26 | 12 | 19 | 0.00000000254015 |
| Marchantia polymorpha | scaffold_87 | 4 | CH_mpo_93 | 6 | 7 | 0.000236341 |
| Medicago truncatula | chr6 | 4 | CH_mtr_244 | 16 | 55 | 0.0000000192821 |
| Medicago truncatula | chr5 | 4 | CH_mtr_453 | 15 | 73 | 0.0000235033 |
| Nelumbo nucifera | scaffold029 | 4 | CH_nnu_302 | 5 | 5 | 0.000595687 |
| Nelumbo nucifera | chr4 | 4 | CH_nnu_303 | 5 | 5 | 0.000595687 |
| Oryza sativa ssp. japonica | chr05 | 4 | CH_osa_403 | 12 | 14 | 0.000354299 |
| Petunia axillaris | Peaxi162Scf00516 | 4 | CH_pax_120 | 7 | 7 | 0.00000107387 |
| Punica granatum | NC_045130.1 | 4 | CH_pgr_298 | 11 | 11 | 0.000162112 |
| Prunus persica | Pp01 | 4 | CH_ppe_187 | 8 | 8 | 0.0000000569641 |
| Pisum sativum | chr2LG1 | 4 | CH_psa_202 | 8 | 14 | 0.0000345165 |
| Papaver somniferum | NC_039364.1 | 4 | CH_pso_370 | 6 | 6 | 0.00000974562 |
| Phaseolus vulgaris | Chr09 | 4 | CH_pvu_350 | 6 | 7 | 0.000647918 |
| Quercus lobata | 4 | 4 | CH_qlo_451 | 26 | 34 | 0.000000189616 |
| Quercus lobata | 10 | 4 | CH_qlo_694 | 29 | 47 | 0.0000453837 |
| Quercus lobata | 10 | 4 | CH_qlo_997 | 18 | 24 | 0.000676871 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_78 | 14 | 17 | 9.72841e-16 |
| Salvia bowleyana | GWHASIU00000001 | 4 | CH_sbo_334 | 6 | 7 | 0.0000524297 |
| Salvia bowleyana | GWHASIU00000008 | 4 | CH_sbo_434 | 5 | 5 | 0.000324327 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_1179 | 6 | 7 | 0.000199127 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_317 | 12 | 15 | 0.00000000000844518 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_556 | 9 | 11 | 0.0000000401215 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_730 | 9 | 14 | 0.00000134632 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_825 | 7 | 8 | 0.00000677654 |
| Sequoiadendron giganteum | HRSCAF_1 | 4 | CH_sgi_905 | 6 | 6 | 0.000029193 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_906 | 7 | 9 | 0.0000296997 |
| Solanum lycopersicum | SL4.0ch02 | 4 | CH_sly_385 | 16 | 21 | 0.000103684 |
| Solanum pennellii | Spenn-ch03 | 4 | CH_spe_137 | 7 | 7 | 0.000000127972 |
| Theobroma cacao | Chromosome_4 | 4 | CH_tca_247 | 7 | 9 | 0.0000416708 |
| Vigna mungo | CM024074.1 | 4 | CH_vmu_260 | 6 | 7 | 0.000268927 |
| Vanilla planifolia | CM028161.1 | 4 | CH_vpl_96 | 10 | 16 | 0.000000464379 |
| Vitis vinifera | chr4 | 4 | CH_vvi_65 | 12 | 13 | 0.000000000000910666 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0005639 | integral component of nuclear inner membrane | 2 |
| GO:0005747 | mitochondrial respiratory chain complex I | 6 |
| GO:0005750 | mitochondrial respiratory chain complex III | 2 |
| GO:0005779 | integral component of peroxisomal membrane | 2 |
| GO:0005887 | integral component of plasma membrane | 2 |
| GO:0030176 | integral component of endoplasmic reticulum membrane | 6 |
| GO:0031303 | integral component of endosome membrane | 4 |
| GO:0031307 | integral component of mitochondrial outer membrane | 6 |
| GO:0031357 | integral component of chloroplast inner membrane | 12 |
| GO:0031359 | integral component of chloroplast outer membrane | 2 |
| GO:0032592 | integral component of mitochondrial membrane | 4 |
| GO:0034705 | potassium channel complex | 4 |
| GO:0042765 | GPI-anchor transamidase complex | 4 |
| GO:0043190 | ATP-binding cassette (ABC) transporter complex | 8 |
| GO:0045271 | respiratory chain complex I | 6 |
| GO:0071458 | integral component of cytoplasmic side of endoplasmic reticulum membrane | 4 |
| GO:0072546 | EMC complex | 20 |
| GO:1902495 | transmembrane transporter complex | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |