Functional clusters

Information

  • Type Gene Ontology
  • Description plasma membrane

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr4 3 CH_ath_169 23 71 0.000000270704
Arabidopsis thaliana Chr4 3 CH_ath_253 23 80 0.00000423914
Arabidopsis thaliana Chr5 3 CH_ath_263 22 74 0.00000531558
Arabidopsis thaliana Chr4 3 CH_ath_343 22 80 0.0000283321
Arabidopsis thaliana Chr4 3 CH_ath_601 20 79 0.000834159
Cannabis sativa NC_044371.1 3 CH_cansat_191 19 60 0.0000432052
Cicer arietinum L. Ca_LG3_v3 3 CH_car_51 24 70 0.00000126532
Eucalyptus grandis Chr08 3 CH_egr_516 12 16 0.00000103011
Eucalyptus grandis Chr09 3 CH_egr_636 8 8 0.0000268708
Erythranthe guttata scaffold_6 3 CH_egut_147 11 11 0.0000000252971
Helianthus annuus HanXRQChr05 3 CH_han_43 17 17 3.36483e-17
Lonicera japonica GWHAAZE00000008 3 CH_lonja_209 24 68 0.0000000356519
Prunus persica Pp06 3 CH_ppe_345 8 9 0.000118258
Quercus lobata 4 3 CH_qlo_323 11 11 0.00000000367088
Quercus lobata 5 3 CH_qlo_351 27 78 0.00000000961421
Salix brachista GWHAAZH00000007 3 CH_sbr_365 11 20 0.000634166
Solanum pennellii Spenn-ch04 3 CH_spe_408 6 6 0.000414026
Zea mays 7 3 CH_zma_160 27 72 0.00000851454
Arabidopsis thaliana Chr4 4 CH_ath_169 23 71 0.000000270704
Arabidopsis thaliana Chr4 4 CH_ath_253 23 80 0.00000423914
Arabidopsis thaliana Chr5 4 CH_ath_263 22 74 0.00000531558
Arabidopsis thaliana Chr4 4 CH_ath_343 22 80 0.0000283321
Arabidopsis thaliana Chr4 4 CH_ath_601 20 79 0.000834159
Cannabis sativa NC_044371.1 4 CH_cansat_191 19 60 0.0000432052
Cicer arietinum L. Ca_LG3_v3 4 CH_car_51 24 70 0.00000126532
Eucalyptus grandis Chr08 4 CH_egr_516 12 16 0.00000103011
Eucalyptus grandis Chr09 4 CH_egr_636 8 8 0.0000268708
Erythranthe guttata scaffold_6 4 CH_egut_147 11 11 0.0000000252971
Helianthus annuus HanXRQChr05 4 CH_han_43 17 17 3.36483e-17
Lonicera japonica GWHAAZE00000008 4 CH_lonja_209 24 68 0.0000000356519
Prunus persica Pp06 4 CH_ppe_345 8 9 0.000118258
Quercus lobata 4 4 CH_qlo_323 11 11 0.00000000367088
Quercus lobata 5 4 CH_qlo_351 27 78 0.00000000961421
Salix brachista GWHAAZH00000007 4 CH_sbr_365 11 20 0.000634166
Solanum pennellii Spenn-ch04 4 CH_spe_408 6 6 0.000414026
Zea mays 7 4 CH_zma_160 27 72 0.00000851454

Available child term results

Ontology identifier Description Number of clusters
GO:0005887 integral component of plasma membrane 2
GO:0005901 caveola 8
GO:0009511 plasmodesmatal endoplasmic reticulum 6
GO:0009897 external side of plasma membrane 2
GO:0009921 auxin efflux carrier complex 6
GO:0009925 basal plasma membrane 4
GO:0016324 apical plasma membrane 2
GO:0016328 lateral plasma membrane 2
GO:0019897 extrinsic component of plasma membrane 32
GO:0030122 AP-2 adaptor complex 6
GO:0030132 clathrin coat of coated pit 8
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane 4
GO:0043190 ATP-binding cassette (ABC) transporter complex 8
GO:0044853 plasma membrane raft 16
GO:0046658 anchored component of plasma membrane 22

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001