Functional clusters

Information

  • Type MapMan
  • Description Redox homeostasis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR07 1 CH_aox_129 7 33 0.0000378856
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_360 5 6 0.00000571491
Brassica oleracea C7 1 CH_bol_391 4 6 0.000495431
Corylus avellana 4 1 CH_cav_187 7 29 0.00000909883
Carpinus fangiana Cfa05 1 CH_cfa_71 8 20 0.00000000112321
Durio zibethinus NW_019167993.1 1 CH_dzi_186 4 4 0.0000437558
Glycine max Gm05 1 CH_gma_316 5 8 0.0000354386
Gossypium raimondii Chr08 1 CH_gra_332 4 5 0.00024346
Hydrangea macrophylla Hma1.2p1_0265F.1 1 CH_hma_312 4 6 0.00019481
Manihot esculenta Chromosome02 1 CH_mes_397 5 11 0.00028959
Medicago truncatula chr8 1 CH_mtr_442 5 9 0.00000992642
Phaseolus vulgaris Chr02 1 CH_pvu_236 5 8 0.0000248226
Salix brachista GWHAAZH00000010 1 CH_sbr_17 13 20 2.6868e-19
Trifolium pratense Tp57577_TGAC_v2_LG3 1 CH_tpr_167 5 8 0.00000547531
Vigna mungo CM024069.1 1 CH_vmu_147 5 8 0.0000126788
Aquilegia oxysepala CHR07 2 CH_aox_129 7 33 0.0000378856
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_360 5 6 0.00000571491
Brassica oleracea C7 2 CH_bol_391 4 6 0.000495431
Corylus avellana 4 2 CH_cav_187 7 29 0.00000909883
Carpinus fangiana Cfa05 2 CH_cfa_71 8 20 0.00000000112321
Durio zibethinus NW_019167993.1 2 CH_dzi_186 4 4 0.0000437558
Gossypium hirsutum D12 2 CH_ghi_740 4 5 0.000458163
Glycine max Gm05 2 CH_gma_316 5 8 0.0000354386
Gossypium raimondii Chr08 2 CH_gra_332 4 5 0.00024346
Hydrangea macrophylla Hma1.2p1_0265F.1 2 CH_hma_312 4 6 0.00019481
Lotus japonicus chr4 2 CH_lja_232 5 8 0.0000266839
Manihot esculenta Chromosome02 2 CH_mes_397 5 11 0.00028959
Phaseolus vulgaris Chr02 2 CH_pvu_236 5 8 0.0000248226
Salix brachista GWHAAZH00000010 2 CH_sbr_17 13 20 2.6868e-19
Trifolium pratense Tp57577_TGAC_v2_LG3 2 CH_tpr_167 5 8 0.00000547531
Vigna mungo CM024069.1 2 CH_vmu_147 5 8 0.0000126788

Available child term results

Ontology identifier Description Number of clusters
10.1.1 Redox homeostasis.controlled reactive oxygen generation.NADPH-oxidase (Rboh) 20
10.2.1 Redox homeostasis.enzymatic reactive oxygen scavenging.superoxide dismutase activities 2
10.2.1.1 Redox homeostasis.enzymatic reactive oxygen scavenging.superoxide dismutase activities.iron superoxide dismutase (FSD) 8
10.2.1.2 Redox homeostasis.enzymatic reactive oxygen scavenging.superoxide dismutase activities.manganese superoxide dismutase (MSD) 8
10.2.1.3 Redox homeostasis.enzymatic reactive oxygen scavenging.superoxide dismutase activities.copper/zinc superoxide dismutase (CSD) 4
10.2.1.4 Redox homeostasis.enzymatic reactive oxygen scavenging.superoxide dismutase activities.copper chaperone (CCS) 2
10.2.2 Redox homeostasis.enzymatic reactive oxygen scavenging.catalase 73
10.2.3 Redox homeostasis.enzymatic reactive oxygen scavenging.glutathione peroxidase 48
10.3 Redox homeostasis.glutathione-based redox regulation 2
10.3.1.1 Redox homeostasis.glutathione-based redox regulation.glutathione biosynthesis.gamma-glutamyl:cysteine ligase 8
10.3.1.2 Redox homeostasis.glutathione-based redox regulation.glutathione biosynthesis.glutathione synthetase (GS) 24
10.3.2.1 Redox homeostasis.glutathione-based redox regulation.glutathione degradation.gamma-glutamyl cyclotransferase 12
10.3.2.2 Redox homeostasis.glutathione-based redox regulation.glutathione degradation.oxoprolinase 8
10.3.2.3 Redox homeostasis.glutathione-based redox regulation.glutathione degradation.deaminated-glutathione amidase 2
10.3.3 Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities 3
10.3.3.1 Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class zeta glutathione S-transferase 5
10.3.3.2 Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class theta glutathione S-transferase 56
10.3.3.3 Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class tau glutathione S-transferase 588
10.3.3.4 Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class phi glutathione S-transferase 153
10.3.3.6 Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class TCHQD glutathione S-transferase 4
10.4.1 Redox homeostasis.thiol-based redox regulation.thioredoxin reductase activities 2
10.4.1.1 Redox homeostasis.thiol-based redox regulation.thioredoxin reductase activities.NADPH-dependent thioredoxin reductase 15
10.4.1.2.1 Redox homeostasis.thiol-based redox regulation.thioredoxin reductase activities.ferredoxin-dependent thioredoxin reductase (FTR) complex.subunit alpha 6
10.4.2.1 Redox homeostasis.thiol-based redox regulation.peroxiredoxin activities.typical 2-Cys peroxiredoxin (2-CysPrx) 12
10.4.2.2 Redox homeostasis.thiol-based redox regulation.peroxiredoxin activities.atypical 2-Cys peroxiredoxin (PrxQ) 12
10.4.2.3 Redox homeostasis.thiol-based redox regulation.peroxiredoxin activities.1-Cys peroxiredoxin (1-CysPrx) 8
10.4.2.4 Redox homeostasis.thiol-based redox regulation.peroxiredoxin activities.type-2 peroxiredoxin (PrxII) 28
10.4.3.10 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.plastidial thioredoxin (CDSP32) 4
10.4.3.2 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.H-type thioredoxin 55
10.4.3.3 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.O-type thioredoxin 2
10.4.3.4 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.X-type thioredoxin 2
10.4.3.5 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.atypical thioredoxin (ACHT) 6
10.4.3.6 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.Y-type thioredoxin 2
10.4.3.8 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.nucleoredoxin 80
10.4.3.9 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.plastidial thioredoxin (WCRKC) 4
10.4.4 Redox homeostasis.thiol-based redox regulation.methionine sulfoxide reductase activities 2
10.4.4.1 Redox homeostasis.thiol-based redox regulation.methionine sulfoxide reductase activities.methionine S-enantiomer sulfoxide reductase (MsrA) 35
10.4.4.2 Redox homeostasis.thiol-based redox regulation.methionine sulfoxide reductase activities.methionine R-enantiomer sulfoxide reductase (MsrB) 37
10.5.1 Redox homeostasis.ascorbate-based redox regulation.ascorbate peroxidase (APX) 26
10.5.2 Redox homeostasis.ascorbate-based redox regulation.monodehydroascorbate reductase (MDAR) 8
10.5.3 Redox homeostasis.ascorbate-based redox regulation.dehydroascorbate reductase (DHAR) 26
10.5.5 Redox homeostasis.ascorbate-based redox regulation.cyt-b561 electron shuttle hemoprotein (CYBASC) 42
10.5.6.1.1 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.phosphomannose isomerase (PMI) 6
10.5.6.1.2 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.phosphomannomutase (PMM) 9
10.5.6.1.3 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.GDP-D-mannose pyrophosphorylase (VTC1) 6
10.5.6.1.4 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.GDP-D-mannose-epimerase (GME) 8
10.5.6.1.5 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.GDP-L-galactose phosphorylase (VTC2/5) 6
10.5.6.1.6 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.L-galactose-1-phosphate phosphatase (VTC4) 10
10.5.6.1.7 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.L-galactose dehydrogenase (GalDH) 2
10.5.6.1.8 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.L-galactono-1,4-lactone dehydrogenase (GLDH) 10
10.5.6.2.1 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-gulose and D-gluconorate biosynthesis pathways.L-gulono-1,4-lactone oxidase (GULLO) 92
10.6.2 Redox homeostasis.tocopherol biosynthesis.4-hydroxyphenylpyruvate dioxygenase (HPPD) 24
10.6.3 Redox homeostasis.tocopherol biosynthesis.homogentisate phytyltransferase (VTE2/HPT) 28
10.6.5 Redox homeostasis.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) 6
10.6.6 Redox homeostasis.tocopherol biosynthesis.gamma-tocopherol methyltransferase (VTE4/TMT) 32
10.6.7 Redox homeostasis.tocopherol biosynthesis.phytol kinase (VTE5) 19

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001