Functional clusters
Information
- Type MapMan
- Description Redox homeostasis.ascorbate-based redox regulation.ascorbate peroxidase (APX)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 1 | CH_amhyb_51 | 3 | 3 | 0.000000595202 |
| Brassica carinata | ChrC05 | 1 | CH_bca_444 | 3 | 4 | 0.00000630482 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 1 | CH_bvu_59 | 4 | 5 | 0.00000000280867 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1000 | 1 | CH_cqu_103 | 4 | 5 | 0.0000000021777 |
| Fragaria x ananassa | Fvb5-4 | 1 | CH_fan_52 | 5 | 10 | 0.0000000000262871 |
| Gossypium hirsutum | A08 | 1 | CH_ghi_179 | 4 | 5 | 0.00000000426827 |
| Gossypium hirsutum | D08 | 1 | CH_ghi_364 | 3 | 3 | 0.00000278063 |
| Gossypium raimondii | Chr04 | 1 | CH_gra_180 | 3 | 3 | 0.00000123302 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 1 | CH_lsa_180 | 5 | 31 | 0.000000102578 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 1 | CH_lsa_265 | 4 | 18 | 0.00000480988 |
| Magnolia biondii | Chr03 | 1 | CH_mbi_617 | 3 | 19 | 0.00056415 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_293 | 4 | 16 | 0.000000246863 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_711 | 3 | 16 | 0.000380966 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 2 | CH_amhyb_51 | 3 | 3 | 0.000000595202 |
| Brassica carinata | ChrC05 | 2 | CH_bca_444 | 3 | 4 | 0.00000630482 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 2 | CH_bvu_59 | 4 | 5 | 0.00000000280867 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1000 | 2 | CH_cqu_103 | 4 | 5 | 0.0000000021777 |
| Fragaria x ananassa | Fvb5-4 | 2 | CH_fan_52 | 5 | 10 | 0.0000000000262871 |
| Gossypium hirsutum | A08 | 2 | CH_ghi_179 | 4 | 5 | 0.00000000426827 |
| Gossypium hirsutum | D08 | 2 | CH_ghi_364 | 3 | 3 | 0.00000278063 |
| Gossypium raimondii | Chr04 | 2 | CH_gra_180 | 3 | 3 | 0.00000123302 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 2 | CH_lsa_180 | 5 | 31 | 0.000000102578 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 2 | CH_lsa_265 | 4 | 18 | 0.00000480988 |
| Magnolia biondii | Chr03 | 2 | CH_mbi_617 | 3 | 19 | 0.00056415 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_293 | 4 | 16 | 0.000000246863 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_711 | 3 | 16 | 0.000380966 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |