Functional clusters
Information
- Type MapMan
- Description Redox homeostasis.tocopherol biosynthesis.homogentisate phytyltransferase (VTE2/HPT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 1 | CH_arhy_192 | 4 | 9 | 0.0000000138359 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 1 | CH_arhy_318 | 3 | 4 | 0.00000244658 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 1 | CH_arhy_401 | 3 | 7 | 0.000021398 |
| Citrus clementina | scaffold_1 | 1 | CH_ccl_66 | 5 | 8 | 0.0000000000570593 |
| Daucus carota | DCARv2_Chr8 | 1 | CH_dca_98 | 4 | 13 | 0.0000000389087 |
| Glycine max | Gm10 | 1 | CH_gma_196 | 3 | 3 | 0.000000618044 |
| Glycine max | Gm13 | 1 | CH_gma_197 | 3 | 3 | 0.000000618044 |
| Lupinus albus | Lalb_Chr18 | 1 | CH_lal_109 | 3 | 4 | 0.000000925389 |
| Lotus japonicus | Contig00141 | 1 | CH_lja_63 | 4 | 4 | 0.000000000138228 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_539 | 3 | 40 | 0.0007807 |
| Punica granatum | NC_045127.1 | 1 | CH_pgr_239 | 3 | 26 | 0.0000877041 |
| Phaseolus vulgaris | Chr07 | 1 | CH_pvu_17 | 7 | 8 | 3.56939e-21 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_507 | 2 | 2 | 0.000387184 |
| Vigna mungo | CM024071.1 | 1 | CH_vmu_54 | 5 | 26 | 0.00000000215985 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 2 | CH_arhy_192 | 4 | 9 | 0.0000000138359 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 2 | CH_arhy_318 | 3 | 4 | 0.00000244658 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 2 | CH_arhy_401 | 3 | 7 | 0.000021398 |
| Citrus clementina | scaffold_1 | 2 | CH_ccl_66 | 5 | 8 | 0.0000000000570593 |
| Daucus carota | DCARv2_Chr8 | 2 | CH_dca_98 | 4 | 13 | 0.0000000389087 |
| Glycine max | Gm10 | 2 | CH_gma_196 | 3 | 3 | 0.000000618044 |
| Glycine max | Gm13 | 2 | CH_gma_197 | 3 | 3 | 0.000000618044 |
| Lupinus albus | Lalb_Chr18 | 2 | CH_lal_109 | 3 | 4 | 0.000000925389 |
| Lotus japonicus | Contig00141 | 2 | CH_lja_63 | 4 | 4 | 0.000000000138228 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_539 | 3 | 40 | 0.0007807 |
| Punica granatum | NC_045127.1 | 2 | CH_pgr_239 | 3 | 26 | 0.0000877041 |
| Phaseolus vulgaris | Chr07 | 2 | CH_pvu_17 | 7 | 8 | 3.56939e-21 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_507 | 2 | 2 | 0.000387184 |
| Vigna mungo | CM024071.1 | 2 | CH_vmu_54 | 5 | 26 | 0.00000000215985 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |