Functional clusters

Information

  • Type MapMan
  • Description Redox homeostasis.enzymatic reactive oxygen scavenging.catalase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 1 CH_acertr_480 2 4 0.000422952
Arabidopsis lyrata scaffold_1 1 CH_aly_329 2 2 0.000198013
Avicennia marina ScioBoG_3008_HRSCAF_3015 1 CH_ama_105 2 2 0.000258665
Amaranthus hybridus AmaHy_arrow1_Contig177_quiver 1 CH_amhyb_189 2 3 0.000252515
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 1 CH_arhy_522 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 1 CH_arhy_680 2 3 0.000538871
Arabidopsis thaliana Chr1 1 CH_ath_279 2 2 0.0000859476
Amborella trichopoda AmTr_v1.0_scaffold00001 1 CH_atr_211 2 2 0.0000794407
Beta vulgaris Chr1_EL10_PGA_scaffold3 1 CH_bvu_259 2 4 0.000496709
Camellia sinensis var. sinensis Chr4 1 CH_camsi_356 3 7 0.00000110367
Cannabis sativa NC_044370.1 1 CH_cansat_309 2 2 0.000196993
Coffea canephora chr7 1 CH_ccan_225 2 3 0.00007666
Coffea canephora chr10 1 CH_ccan_287 2 7 0.000255531
Citrus clementina scaffold_5 1 CH_ccl_333 2 2 0.0000820311
Cardamine hirsuta Chr1 1 CH_chi_317 2 2 0.000207361
Carya illinoinensis Chr07 1 CH_cil_520 2 3 0.000557817
Cucumis melo chr07 1 CH_cme_251 2 2 0.000200133
Capsella rubella scaffold_1 1 CH_cru_340 2 2 0.000219346
Cucumis sativus L. chr4 1 CH_csa_277 2 2 0.000250428
Daucus carota DCARv2_Chr5 1 CH_dca_485 2 2 0.000956663
Daucus carota DCARv2_Chr4 1 CH_dca_486 2 2 0.000956663
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_285 2 2 0.0000448722
Eutrema salsugineum scaffold_5 1 CH_esa_262 2 2 0.00022845
Helianthus annuus HanXRQChr08 1 CH_han_701 2 2 0.000579643
Lonicera japonica GWHAAZE00000004 1 CH_lonja_558 2 2 0.000359324
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_345 2 2 0.0000514007
Malus domestica Chr06 1 CH_mdo_175 3 5 0.0000000215698
Manihot esculenta Chromosome05 1 CH_mes_500 2 2 0.000915947
Manihot esculenta Chromosome18 1 CH_mes_501 2 2 0.000915947
Punica granatum NC_045133.1 1 CH_pgr_293 2 2 0.000225107
Prunus persica Pp05 1 CH_ppe_355 2 2 0.0000745962
Quercus lobata CM012294 1 CH_qlo_691 2 2 0.0000516289
Simmondsia chinensis GWHAASQ00000002 1 CH_sci_205 2 3 0.000255417
Schrenkiella parvula ch1-1 1 CH_spa_235 2 2 0.000236202
Trochodendron aralioides group14 1 CH_tar_488 2 3 0.000540303
Tarenaya hassleriana NW_010965372.1 1 CH_tha_218 2 2 0.00069847
Acer truncatum chr13 2 CH_acertr_480 2 4 0.000422952
Arabidopsis lyrata scaffold_1 2 CH_aly_329 2 2 0.000198013
Avicennia marina ScioBoG_3008_HRSCAF_3015 2 CH_ama_105 2 2 0.000258665
Amaranthus hybridus AmaHy_arrow1_Contig177_quiver 2 CH_amhyb_189 2 3 0.000252515
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 2 CH_arhy_522 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 2 CH_arhy_680 2 3 0.000538871
Arabidopsis thaliana Chr1 2 CH_ath_279 2 2 0.0000859476
Amborella trichopoda AmTr_v1.0_scaffold00001 2 CH_atr_211 2 2 0.0000794407
Beta vulgaris Chr1_EL10_PGA_scaffold3 2 CH_bvu_259 2 4 0.000496709
Camellia sinensis var. sinensis Chr4 2 CH_camsi_356 3 7 0.00000110367
Cannabis sativa NC_044370.1 2 CH_cansat_309 2 2 0.000196993
Coffea canephora chr7 2 CH_ccan_225 2 3 0.00007666
Coffea canephora chr10 2 CH_ccan_287 2 7 0.000255531
Citrus clementina scaffold_5 2 CH_ccl_333 2 2 0.0000820311
Cardamine hirsuta Chr1 2 CH_chi_317 2 2 0.000207361
Carya illinoinensis Chr07 2 CH_cil_520 2 3 0.000557817
Cucumis melo chr07 2 CH_cme_251 2 2 0.000200133
Capsella rubella scaffold_1 2 CH_cru_340 2 2 0.000219346
Cucumis sativus L. chr4 2 CH_csa_277 2 2 0.000250428
Daucus carota DCARv2_Chr5 2 CH_dca_485 2 2 0.000956663
Daucus carota DCARv2_Chr4 2 CH_dca_486 2 2 0.000956663
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_285 2 2 0.0000448722
Eucalyptus grandis Chr06 2 CH_egr_386 3 3 0.0000000205534
Eutrema salsugineum scaffold_5 2 CH_esa_262 2 2 0.00022845
Helianthus annuus HanXRQChr08 2 CH_han_701 2 2 0.000579643
Lonicera japonica GWHAAZE00000004 2 CH_lonja_558 2 2 0.000359324
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_345 2 2 0.0000514007
Malus domestica Chr06 2 CH_mdo_175 3 5 0.0000000215698
Manihot esculenta Chromosome05 2 CH_mes_500 2 2 0.000915947
Manihot esculenta Chromosome18 2 CH_mes_501 2 2 0.000915947
Punica granatum NC_045133.1 2 CH_pgr_293 2 2 0.000225107
Prunus persica Pp05 2 CH_ppe_355 2 2 0.0000745962
Quercus lobata CM012294 2 CH_qlo_691 2 2 0.0000516289
Simmondsia chinensis GWHAASQ00000002 2 CH_sci_205 2 3 0.000255417
Schrenkiella parvula ch1-1 2 CH_spa_235 2 2 0.000236202
Trochodendron aralioides group14 2 CH_tar_488 2 3 0.000540303
Tarenaya hassleriana NW_010965372.1 2 CH_tha_218 2 2 0.00069847

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001