Functional clusters

Information

  • Type MapMan
  • Description Redox homeostasis.ascorbate-based redox regulation.cyt-b561 electron shuttle hemoprotein (CYBASC)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR03 1 CH_aox_102 3 5 0.00000337578
Amborella trichopoda AmTr_v1.0_scaffold00008 1 CH_atr_94 3 3 0.000000189332
Citrus clementina scaffold_2 1 CH_ccl_496 2 2 0.000820311
Ceratophyllum demersum 5 1 CH_cde_288 2 2 0.000789796
Carica papaya supercontig_2 1 CH_cpa_356 2 2 0.000570396
Daucus carota DCARv2_Chr8 1 CH_dca_487 2 2 0.000956663
Durio zibethinus NW_019167971.1 1 CH_dzi_410 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_536 2 2 0.000942317
Manihot esculenta Chromosome06 1 CH_mes_502 2 2 0.000915947
Manihot esculenta Chromosome17 1 CH_mes_503 2 2 0.000915947
Prunus persica Pp01 1 CH_ppe_517 2 2 0.000745962
Pisum sativum chr6LG2 1 CH_psa_413 2 2 0.000782452
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_767 2 2 0.000597979
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_768 2 2 0.000597979
Striga asiatica scaffold16 1 CH_sas_147 2 2 0.000625371
Sequoiadendron giganteum chr2 1 CH_sgi_302 4 5 0.0000000000606942
Solanum lycopersicum SL4.0ch01 1 CH_sly_527 2 2 0.000586941
Solanum pennellii Spenn-ch01 1 CH_spe_487 2 2 0.00044479
Solanum tuberosum ST4.03ch01 1 CH_stu_574 2 2 0.000512453
Tripterygium wilfordii NC_052253.1 1 CH_twi_320 2 3 0.00083626
Vitis vinifera chr1 1 CH_vvi_158 3 3 0.000000173574
Aquilegia oxysepala CHR03 2 CH_aox_102 3 5 0.00000337578
Amborella trichopoda AmTr_v1.0_scaffold00008 2 CH_atr_94 3 3 0.000000189332
Citrus clementina scaffold_2 2 CH_ccl_496 2 2 0.000820311
Ceratophyllum demersum 5 2 CH_cde_288 2 2 0.000789796
Carica papaya supercontig_2 2 CH_cpa_356 2 2 0.000570396
Daucus carota DCARv2_Chr8 2 CH_dca_487 2 2 0.000956663
Durio zibethinus NW_019167971.1 2 CH_dzi_410 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_536 2 2 0.000942317
Manihot esculenta Chromosome06 2 CH_mes_502 2 2 0.000915947
Manihot esculenta Chromosome17 2 CH_mes_503 2 2 0.000915947
Prunus persica Pp01 2 CH_ppe_517 2 2 0.000745962
Pisum sativum chr6LG2 2 CH_psa_413 2 2 0.000782452
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_767 2 2 0.000597979
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_768 2 2 0.000597979
Striga asiatica scaffold16 2 CH_sas_147 2 2 0.000625371
Sequoiadendron giganteum chr2 2 CH_sgi_302 4 5 0.0000000000606942
Solanum lycopersicum SL4.0ch01 2 CH_sly_527 2 2 0.000586941
Solanum pennellii Spenn-ch01 2 CH_spe_487 2 2 0.00044479
Solanum tuberosum ST4.03ch01 2 CH_stu_574 2 2 0.000512453
Tripterygium wilfordii NC_052253.1 2 CH_twi_320 2 3 0.00083626
Vitis vinifera chr1 2 CH_vvi_158 3 3 0.000000173574

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001