Functional clusters
Information
- Type MapMan
- Description Redox homeostasis.ascorbate-based redox regulation.cyt-b561 electron shuttle hemoprotein (CYBASC)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aquilegia oxysepala | CHR03 | 1 | CH_aox_102 | 3 | 5 | 0.00000337578 |
Amborella trichopoda | AmTr_v1.0_scaffold00008 | 1 | CH_atr_94 | 3 | 3 | 0.000000189332 |
Citrus clementina | scaffold_2 | 1 | CH_ccl_496 | 2 | 2 | 0.000820311 |
Ceratophyllum demersum | 5 | 1 | CH_cde_288 | 2 | 2 | 0.000789796 |
Carica papaya | supercontig_2 | 1 | CH_cpa_356 | 2 | 2 | 0.000570396 |
Daucus carota | DCARv2_Chr8 | 1 | CH_dca_487 | 2 | 2 | 0.000956663 |
Durio zibethinus | NW_019167971.1 | 1 | CH_dzi_410 | 2 | 2 | 0.000973326 |
Erigeron canadensis | Conyza_canadensis_scaffold:4 | 1 | CH_eca_536 | 2 | 2 | 0.000942317 |
Manihot esculenta | Chromosome06 | 1 | CH_mes_502 | 2 | 2 | 0.000915947 |
Manihot esculenta | Chromosome17 | 1 | CH_mes_503 | 2 | 2 | 0.000915947 |
Prunus persica | Pp01 | 1 | CH_ppe_517 | 2 | 2 | 0.000745962 |
Pisum sativum | chr6LG2 | 1 | CH_psa_413 | 2 | 2 | 0.000782452 |
Rosa chinensis | RcHm_v2.0_Chr1 | 1 | CH_rch_767 | 2 | 2 | 0.000597979 |
Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_768 | 2 | 2 | 0.000597979 |
Striga asiatica | scaffold16 | 1 | CH_sas_147 | 2 | 2 | 0.000625371 |
Sequoiadendron giganteum | chr2 | 1 | CH_sgi_302 | 4 | 5 | 0.0000000000606942 |
Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_527 | 2 | 2 | 0.000586941 |
Solanum pennellii | Spenn-ch01 | 1 | CH_spe_487 | 2 | 2 | 0.00044479 |
Solanum tuberosum | ST4.03ch01 | 1 | CH_stu_574 | 2 | 2 | 0.000512453 |
Tripterygium wilfordii | NC_052253.1 | 1 | CH_twi_320 | 2 | 3 | 0.00083626 |
Vitis vinifera | chr1 | 1 | CH_vvi_158 | 3 | 3 | 0.000000173574 |
Aquilegia oxysepala | CHR03 | 2 | CH_aox_102 | 3 | 5 | 0.00000337578 |
Amborella trichopoda | AmTr_v1.0_scaffold00008 | 2 | CH_atr_94 | 3 | 3 | 0.000000189332 |
Citrus clementina | scaffold_2 | 2 | CH_ccl_496 | 2 | 2 | 0.000820311 |
Ceratophyllum demersum | 5 | 2 | CH_cde_288 | 2 | 2 | 0.000789796 |
Carica papaya | supercontig_2 | 2 | CH_cpa_356 | 2 | 2 | 0.000570396 |
Daucus carota | DCARv2_Chr8 | 2 | CH_dca_487 | 2 | 2 | 0.000956663 |
Durio zibethinus | NW_019167971.1 | 2 | CH_dzi_410 | 2 | 2 | 0.000973326 |
Erigeron canadensis | Conyza_canadensis_scaffold:4 | 2 | CH_eca_536 | 2 | 2 | 0.000942317 |
Manihot esculenta | Chromosome06 | 2 | CH_mes_502 | 2 | 2 | 0.000915947 |
Manihot esculenta | Chromosome17 | 2 | CH_mes_503 | 2 | 2 | 0.000915947 |
Prunus persica | Pp01 | 2 | CH_ppe_517 | 2 | 2 | 0.000745962 |
Pisum sativum | chr6LG2 | 2 | CH_psa_413 | 2 | 2 | 0.000782452 |
Rosa chinensis | RcHm_v2.0_Chr1 | 2 | CH_rch_767 | 2 | 2 | 0.000597979 |
Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_768 | 2 | 2 | 0.000597979 |
Striga asiatica | scaffold16 | 2 | CH_sas_147 | 2 | 2 | 0.000625371 |
Sequoiadendron giganteum | chr2 | 2 | CH_sgi_302 | 4 | 5 | 0.0000000000606942 |
Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_527 | 2 | 2 | 0.000586941 |
Solanum pennellii | Spenn-ch01 | 2 | CH_spe_487 | 2 | 2 | 0.00044479 |
Solanum tuberosum | ST4.03ch01 | 2 | CH_stu_574 | 2 | 2 | 0.000512453 |
Tripterygium wilfordii | NC_052253.1 | 2 | CH_twi_320 | 2 | 3 | 0.00083626 |
Vitis vinifera | chr1 | 2 | CH_vvi_158 | 3 | 3 | 0.000000173574 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |