Functional clusters

Information

  • Type MapMan
  • Description Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-gulose and D-gluconorate biosynthesis pathways.L-gulono-1,4-lactone oxidase (GULLO)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 1 CH_aag_8 7 40 0.00000000000000404641
Arabidopsis lyrata scaffold_4 1 CH_aly_128 3 3 0.000000228728
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_722 2 2 0.000838273
Arabidopsis thaliana Chr2 1 CH_ath_114 3 3 0.0000000430914
Amborella trichopoda AmTr_v1.0_scaffold00045 1 CH_atr_286 2 2 0.000476644
Brassica carinata ChrC02 1 CH_bca_267 3 3 0.000000196034
Brassica napus C02 1 CH_bna_411 3 10 0.0000225359
Brassica oleracea C4 1 CH_bol_428 2 2 0.000915212
Brassica rapa A05 1 CH_bra_81 3 3 0.0000000552942
Camellia sinensis var. sinensis Chr3 1 CH_camsi_922 2 3 0.000825341
Cannabis sativa NC_044371.1 1 CH_cansat_42 5 12 0.000000000000662452
Corylus avellana 11 1 CH_cav_343 2 2 0.000230008
Coffea canephora chr11 1 CH_ccan_146 3 64 0.00000884225
Carpinus fangiana Cfa01 1 CH_cfa_290 2 2 0.000227204
Cardamine hirsuta Chr4 1 CH_chi_410 2 2 0.000691204
Corchorus olitorius AWUE01016487.1 1 CH_col_61 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_1447 1 CH_cqu_604 2 2 0.000995025
Capsella rubella scaffold_4 1 CH_cru_141 3 3 0.000000160382
Eutrema salsugineum scaffold_22 1 CH_esa_316 2 2 0.000761499
Eutrema salsugineum scaffold_4 1 CH_esa_317 2 2 0.000761499
Fragaria x ananassa Fvb7-3 1 CH_fan_294 3 10 0.0000135517
Fragaria vesca Fvb7 1 CH_fve_334 2 2 0.00017673
Glycine max Gm16 1 CH_gma_161 3 3 0.000000121016
Helianthus annuus HanXRQChr09 1 CH_han_264 3 5 0.000000447934
Lupinus albus Lalb_Chr03 1 CH_lal_397 2 2 0.000787236
Lupinus albus Lalb_Chr24 1 CH_lal_398 2 2 0.000787236
Magnolia biondii Chr09 1 CH_mbi_117 4 11 0.0000000079333
Malus domestica Chr01 1 CH_mdo_634 2 2 0.000379212
Punica granatum NC_045131.1 1 CH_pgr_272 2 2 0.000225107
Pisum sativum chr6LG2 1 CH_psa_323 2 2 0.000312981
Populus trichocarpa Chr02 1 CH_ptr_362 2 2 0.0001734
Quercus lobata 8 1 CH_qlo_356 3 3 0.0000000159937
Rhododendron simsii chr01 1 CH_rsi_179 3 4 0.0000000999387
Sequoiadendron giganteum chr1 1 CH_sgi_133 7 7 5.63569e-17
Sequoiadendron giganteum chr1 1 CH_sgi_261 6 9 0.00000000000484573
Sequoiadendron giganteum chr5 1 CH_sgi_47 12 22 2.14387e-26
Sequoiadendron giganteum chr1 1 CH_sgi_588 4 6 0.000000847586
Sequoiadendron giganteum chr5 1 CH_sgi_639 4 8 0.00000394874
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_975 3 3 0.0000540383
Selaginella moellendorffii scaffold_52 1 CH_smo_159 4 47 0.000776149
Trochodendron aralioides group15 1 CH_tar_335 2 2 0.00018011
Tripterygium wilfordii NC_052239.1 1 CH_twi_263 2 3 0.000501733
Utricularia gibba unitig_61 1 CH_ugi_203 2 2 0.000220378
Vigna mungo CM024072.1 1 CH_vmu_328 2 2 0.000387685
Vanilla planifolia CM028152.1 1 CH_vpl_117 3 12 0.0000180018
Vanilla planifolia CM028152.1 1 CH_vpl_364 2 2 0.00073888
Anthoceros agrestis Sc2ySwM_344 2 CH_aag_8 7 40 0.00000000000000404641
Arabidopsis lyrata scaffold_4 2 CH_aly_128 3 3 0.000000228728
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_722 2 2 0.000838273
Arabidopsis thaliana Chr2 2 CH_ath_114 3 3 0.0000000430914
Amborella trichopoda AmTr_v1.0_scaffold00045 2 CH_atr_286 2 2 0.000476644
Brassica carinata ChrC02 2 CH_bca_267 3 3 0.000000196034
Brassica oleracea C4 2 CH_bol_428 2 2 0.000915212
Brassica rapa A05 2 CH_bra_81 3 3 0.0000000552942
Camellia sinensis var. sinensis Chr3 2 CH_camsi_922 2 3 0.000825341
Cannabis sativa NC_044371.1 2 CH_cansat_42 5 12 0.000000000000662452
Corylus avellana 11 2 CH_cav_343 2 2 0.000230008
Coffea canephora chr11 2 CH_ccan_146 3 64 0.00000884225
Carpinus fangiana Cfa01 2 CH_cfa_290 2 2 0.000227204
Cardamine hirsuta Chr4 2 CH_chi_410 2 2 0.000691204
Corchorus olitorius AWUE01016487.1 2 CH_col_61 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_1447 2 CH_cqu_604 2 2 0.000995025
Capsella rubella scaffold_4 2 CH_cru_141 3 3 0.000000160382
Eutrema salsugineum scaffold_22 2 CH_esa_316 2 2 0.000761499
Eutrema salsugineum scaffold_4 2 CH_esa_317 2 2 0.000761499
Fragaria x ananassa Fvb7-3 2 CH_fan_294 3 10 0.0000135517
Fragaria vesca Fvb7 2 CH_fve_334 2 2 0.00017673
Glycine max Gm16 2 CH_gma_161 3 3 0.000000121016
Helianthus annuus HanXRQChr09 2 CH_han_264 3 5 0.000000447934
Lupinus albus Lalb_Chr03 2 CH_lal_397 2 2 0.000787236
Lupinus albus Lalb_Chr24 2 CH_lal_398 2 2 0.000787236
Lotus japonicus chr1 2 CH_lja_363 2 2 0.000429046
Magnolia biondii Chr09 2 CH_mbi_117 4 11 0.0000000079333
Malus domestica Chr01 2 CH_mdo_634 2 2 0.000379212
Punica granatum NC_045131.1 2 CH_pgr_272 2 2 0.000225107
Pisum sativum chr6LG2 2 CH_psa_323 2 2 0.000312981
Populus trichocarpa Chr02 2 CH_ptr_362 2 2 0.0001734
Quercus lobata 8 2 CH_qlo_356 3 3 0.0000000159937
Rhododendron simsii chr01 2 CH_rsi_179 3 4 0.0000000999387
Sequoiadendron giganteum chr1 2 CH_sgi_133 7 7 5.63569e-17
Sequoiadendron giganteum chr1 2 CH_sgi_261 6 9 0.00000000000484573
Sequoiadendron giganteum chr5 2 CH_sgi_47 12 22 2.14387e-26
Sequoiadendron giganteum chr1 2 CH_sgi_588 4 6 0.000000847586
Sequoiadendron giganteum chr5 2 CH_sgi_639 4 8 0.00000394874
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_975 3 3 0.0000540383
Selaginella moellendorffii scaffold_52 2 CH_smo_159 4 47 0.000776149
Trochodendron aralioides group15 2 CH_tar_335 2 2 0.00018011
Tripterygium wilfordii NC_052239.1 2 CH_twi_263 2 3 0.000501733
Utricularia gibba unitig_61 2 CH_ugi_203 2 2 0.000220378
Vigna mungo CM024072.1 2 CH_vmu_328 2 2 0.000387685
Vanilla planifolia CM028152.1 2 CH_vpl_117 3 12 0.0000180018
Vanilla planifolia CM028152.1 2 CH_vpl_364 2 2 0.00073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001