Functional clusters

Information

  • Type MapMan
  • Description Redox homeostasis.thiol-based redox regulation.thioredoxin activities.nucleoredoxin

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group12 1 CH_ach_238 2 2 0.000543213
Aquilegia oxysepala CHR03 1 CH_aox_339 2 2 0.000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 1 CH_arhy_747 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_748 2 2 0.000838273
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_91 3 3 0.000000102821
Camellia sinensis var. sinensis Chr10 1 CH_camsi_290 3 3 0.000000176627
Cannabis sativa NC_044373.1 1 CH_cansat_53 4 4 0.00000000000424737
Cicer arietinum L. Ca_LG7_v3 1 CH_car_311 2 2 0.000778301
Ceratophyllum demersum 5 1 CH_cde_25 4 32 0.0000000530953
Carpinus fangiana Cfa03 1 CH_cfa_57 4 5 0.00000000009774
Citrullus lanatus CG_Chr08 1 CH_cla_26 4 7 0.00000000923141
Cucumis melo chr09 1 CH_cme_44 4 4 0.0000000000311765
Carica papaya supercontig_69 1 CH_cpa_64 3 3 0.00000013557
Chlamydomonas reinhardtii chromosome_2 1 CH_cre_19 3 8 0.00000434433
Cucumis sativus L. chr5 1 CH_csa_54 4 4 0.000000000061084
Eucalyptus grandis Chr08 1 CH_egr_115 6 7 9.0874e-18
Erythranthe guttata scaffold_5 1 CH_egut_304 2 2 0.0000728147
Fragaria x ananassa Fvb4-3 1 CH_fan_627 2 2 0.000832663
Fragaria vesca Fvb4 1 CH_fve_403 2 2 0.000353461
Hydrangea macrophylla Hma1.2p1_0160F.1 1 CH_hma_247 2 2 0.000111086
Magnolia biondii Chr19 1 CH_mbi_642 2 2 0.000728491
Malus domestica Chr16 1 CH_mdo_113 4 5 0.000000000269911
Manihot esculenta Chromosome12 1 CH_mes_465 2 2 0.000610631
Nicotiana tabacum Nitab4.5_0000203 1 CH_nta_143 2 2 0.000329182
Olea europaea scaffold1119 1 CH_oeu_173 2 2 0.0000533789
Petunia axillaris Peaxi162Scf00338 1 CH_pax_98 3 5 0.000000296969
Punica granatum NC_045128.1 1 CH_pgr_366 2 2 0.000750356
Prunus persica Pp01 1 CH_ppe_190 3 3 0.000000166944
Populus trichocarpa Chr10 1 CH_ptr_15 9 9 1.2636e-28
Quercus lobata 3 1 CH_qlo_51 7 9 6.44433e-21
Rhododendron simsii chr12 1 CH_rsi_76 4 4 0.00000000000403118
Simmondsia chinensis GWHAASQ00000004 1 CH_sci_57 3 3 0.000000108744
Sechium edule LG10 1 CH_sed_93 3 3 0.000000267217
Sequoiadendron giganteum chr6 1 CH_sgi_206 5 7 0.000000000000223507
Solanum lycopersicum SL4.0ch05 1 CH_sly_418 2 2 0.000176082
Solanum pennellii Spenn-ch05 1 CH_spe_367 2 2 0.000133437
Selenicereus undatus Scaffold_19641 1 CH_sun_244 2 2 0.000435983
Trochodendron aralioides group13 1 CH_tar_141 3 3 0.000000189236
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_48 4 4 0.0000000000120374
Vitis vinifera chr1 1 CH_vvi_61 5 9 0.000000000000664152
Actinidia chinensis Lachesis_group12 2 CH_ach_238 2 2 0.000543213
Aquilegia oxysepala CHR03 2 CH_aox_339 2 2 0.000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 2 CH_arhy_747 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_748 2 2 0.000838273
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_91 3 3 0.000000102821
Camellia sinensis var. sinensis Chr10 2 CH_camsi_290 3 3 0.000000176627
Cannabis sativa NC_044373.1 2 CH_cansat_53 4 4 0.00000000000424737
Cicer arietinum L. Ca_LG7_v3 2 CH_car_311 2 2 0.000778301
Ceratophyllum demersum 5 2 CH_cde_25 4 32 0.0000000530953
Carpinus fangiana Cfa03 2 CH_cfa_57 4 5 0.00000000009774
Citrullus lanatus CG_Chr08 2 CH_cla_26 4 7 0.00000000923141
Cucumis melo chr09 2 CH_cme_44 4 4 0.0000000000311765
Carica papaya supercontig_69 2 CH_cpa_64 3 3 0.00000013557
Chlamydomonas reinhardtii chromosome_2 2 CH_cre_19 3 8 0.00000434433
Cucumis sativus L. chr5 2 CH_csa_54 4 4 0.000000000061084
Eucalyptus grandis Chr08 2 CH_egr_115 6 7 9.0874e-18
Erythranthe guttata scaffold_5 2 CH_egut_304 2 2 0.0000728147
Fragaria x ananassa Fvb4-3 2 CH_fan_627 2 2 0.000832663
Fragaria vesca Fvb4 2 CH_fve_403 2 2 0.000353461
Hydrangea macrophylla Hma1.2p1_0160F.1 2 CH_hma_247 2 2 0.000111086
Magnolia biondii Chr19 2 CH_mbi_642 2 2 0.000728491
Malus domestica Chr16 2 CH_mdo_113 4 5 0.000000000269911
Manihot esculenta Chromosome12 2 CH_mes_465 2 2 0.000610631
Nicotiana tabacum Nitab4.5_0000203 2 CH_nta_143 2 2 0.000329182
Olea europaea scaffold1119 2 CH_oeu_173 2 2 0.0000533789
Petunia axillaris Peaxi162Scf00338 2 CH_pax_98 3 5 0.000000296969
Punica granatum NC_045128.1 2 CH_pgr_366 2 2 0.000750356
Prunus persica Pp01 2 CH_ppe_190 3 3 0.000000166944
Populus trichocarpa Chr10 2 CH_ptr_15 9 9 1.2636e-28
Quercus lobata 3 2 CH_qlo_51 7 9 6.44433e-21
Rhododendron simsii chr12 2 CH_rsi_76 4 4 0.00000000000403118
Simmondsia chinensis GWHAASQ00000004 2 CH_sci_57 3 3 0.000000108744
Sechium edule LG10 2 CH_sed_93 3 3 0.000000267217
Sequoiadendron giganteum chr6 2 CH_sgi_206 5 7 0.000000000000223507
Solanum lycopersicum SL4.0ch05 2 CH_sly_418 2 2 0.000176082
Solanum pennellii Spenn-ch05 2 CH_spe_367 2 2 0.000133437
Selenicereus undatus Scaffold_19641 2 CH_sun_244 2 2 0.000435983
Trochodendron aralioides group13 2 CH_tar_141 3 3 0.000000189236
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_48 4 4 0.0000000000120374
Vitis vinifera chr1 2 CH_vvi_61 5 9 0.000000000000664152

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001