Functional clusters
Information
- Type MapMan
- Description Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class theta glutathione S-transferase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr9 | 1 | CH_acertr_318 | 2 | 2 | 0.000070497 |
| Actinidia chinensis | Lachesis_group14 | 1 | CH_ach_213 | 2 | 3 | 0.000488869 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 1 | CH_amhyb_202 | 2 | 2 | 0.000252525 |
| Aquilegia oxysepala | CHR07 | 1 | CH_aox_59 | 3 | 4 | 0.0000000385912 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_81 | 3 | 5 | 0.00000000492466 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_182 | 2 | 2 | 0.0000827917 |
| Camellia sinensis var. sinensis | Chr14 | 1 | CH_camsi_280 | 3 | 4 | 0.000000126155 |
| Capsicum annuum | PGAv.1.6.scaffold774 | 1 | CH_can_165 | 3 | 4 | 0.000000818863 |
| Coffea canephora | chr8 | 1 | CH_ccan_9 | 5 | 29 | 0.00000000000000615278 |
| Citrus clementina | scaffold_3 | 1 | CH_ccl_314 | 2 | 2 | 0.0000820311 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1280 | 1 | CH_cqu_135 | 3 | 3 | 0.0000000336768 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3489 | 1 | CH_cqu_499 | 2 | 2 | 0.000473821 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 1 | CH_eca_102 | 3 | 4 | 0.0000000120811 |
| Gossypium raimondii | Chr07 | 1 | CH_gra_421 | 2 | 2 | 0.000536107 |
| Helianthus annuus | HanXRQChr13 | 1 | CH_han_133 | 4 | 4 | 0.0000000000856958 |
| Helianthus annuus | HanXRQChr13 | 1 | CH_han_232 | 4 | 15 | 0.000000116791 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_385 | 2 | 2 | 0.0000598874 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 1 | CH_lsa_2 | 11 | 11 | 6.02875e-38 |
| Manihot esculenta | Chromosome01 | 1 | CH_mes_422 | 2 | 2 | 0.000366379 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_227 | 2 | 2 | 0.0000521635 |
| Papaver somniferum | NC_039361.1 | 1 | CH_pso_16 | 7 | 8 | 2.82304e-22 |
| Papaver somniferum | NC_039365.1 | 1 | CH_pso_37 | 6 | 9 | 3.28934e-17 |
| Simmondsia chinensis | GWHAASQ00000007 | 1 | CH_sci_257 | 2 | 2 | 0.000510856 |
| Solanum lycopersicum | SL4.0ch08 | 1 | CH_sly_481 | 2 | 2 | 0.000352164 |
| Selaginella moellendorffii | scaffold_0 | 1 | CH_smo_107 | 3 | 46 | 0.000198121 |
| Solanum pennellii | Spenn-ch08 | 1 | CH_spe_463 | 2 | 3 | 0.000400297 |
| Selenicereus undatus | Scaffold_33677 | 1 | CH_sun_47 | 3 | 5 | 0.000000316773 |
| Tripterygium wilfordii | NC_052251.1 | 1 | CH_twi_178 | 2 | 2 | 0.0000557507 |
| Acer truncatum | chr9 | 2 | CH_acertr_318 | 2 | 2 | 0.000070497 |
| Actinidia chinensis | Lachesis_group14 | 2 | CH_ach_213 | 2 | 3 | 0.000488869 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 2 | CH_amhyb_202 | 2 | 2 | 0.000252525 |
| Aquilegia oxysepala | CHR07 | 2 | CH_aox_59 | 3 | 4 | 0.0000000385912 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_81 | 3 | 5 | 0.00000000492466 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_182 | 2 | 2 | 0.0000827917 |
| Camellia sinensis var. sinensis | Chr14 | 2 | CH_camsi_280 | 3 | 4 | 0.000000126155 |
| Capsicum annuum | PGAv.1.6.scaffold774 | 2 | CH_can_165 | 3 | 4 | 0.000000818863 |
| Coffea canephora | chr8 | 2 | CH_ccan_9 | 5 | 29 | 0.00000000000000615278 |
| Citrus clementina | scaffold_3 | 2 | CH_ccl_314 | 2 | 2 | 0.0000820311 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1280 | 2 | CH_cqu_135 | 3 | 3 | 0.0000000336768 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3489 | 2 | CH_cqu_499 | 2 | 2 | 0.000473821 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 2 | CH_eca_102 | 3 | 4 | 0.0000000120811 |
| Gossypium raimondii | Chr07 | 2 | CH_gra_421 | 2 | 2 | 0.000536107 |
| Helianthus annuus | HanXRQChr13 | 2 | CH_han_133 | 4 | 4 | 0.0000000000856958 |
| Helianthus annuus | HanXRQChr13 | 2 | CH_han_232 | 4 | 15 | 0.000000116791 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_385 | 2 | 2 | 0.0000598874 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 2 | CH_lsa_2 | 11 | 11 | 6.02875e-38 |
| Manihot esculenta | Chromosome01 | 2 | CH_mes_422 | 2 | 2 | 0.000366379 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_227 | 2 | 2 | 0.0000521635 |
| Papaver somniferum | NC_039361.1 | 2 | CH_pso_16 | 7 | 8 | 2.82304e-22 |
| Papaver somniferum | NC_039365.1 | 2 | CH_pso_37 | 6 | 9 | 3.28934e-17 |
| Simmondsia chinensis | GWHAASQ00000007 | 2 | CH_sci_257 | 2 | 2 | 0.000510856 |
| Solanum lycopersicum | SL4.0ch08 | 2 | CH_sly_481 | 2 | 2 | 0.000352164 |
| Selaginella moellendorffii | scaffold_0 | 2 | CH_smo_107 | 3 | 46 | 0.000198121 |
| Solanum pennellii | Spenn-ch08 | 2 | CH_spe_463 | 2 | 3 | 0.000400297 |
| Selenicereus undatus | Scaffold_33677 | 2 | CH_sun_47 | 3 | 5 | 0.000000316773 |
| Tripterygium wilfordii | NC_052251.1 | 2 | CH_twi_178 | 2 | 2 | 0.0000557507 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |