Functional clusters

Information

  • Type MapMan
  • Description Redox homeostasis.enzymatic reactive oxygen scavenging.glutathione peroxidase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_102834_HRSCAF_103055 1 CH_ama_28 3 3 0.000000624499
Camellia sinensis var. sinensis Chr12 1 CH_camsi_308 4 27 0.000000354582
Cicer arietinum L. Ca_LG6_v3 1 CH_car_314 2 2 0.000778301
Cucumis melo chr09 1 CH_cme_312 2 2 0.000667111
Corchorus olitorius AWUE01022397.1 1 CH_col_95 2 2 0.000292099
Carica papaya supercontig_74 1 CH_cpa_355 2 2 0.000570396
Davidia involucrata GWHABJS00000003 1 CH_din_477 2 2 0.000500125
Fragaria x ananassa Fvb5-2 1 CH_fan_266 3 5 0.00000585333
Fragaria vesca Fvb5 1 CH_fve_74 4 6 0.00000000032196
Magnolia biondii Chr18 1 CH_mbi_67 5 9 0.00000000000676212
Malus domestica Chr06 1 CH_mdo_106 4 4 0.000000000163766
Malus domestica Chr14 1 CH_mdo_250 3 3 0.000000785171
Punica granatum NC_045127.1 1 CH_pgr_373 2 2 0.000750356
Prunus persica Pp05 1 CH_ppe_93 4 4 0.0000000000435902
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_330 3 4 0.000000800904
Striga asiatica scaffold385 1 CH_sas_160 2 2 0.000938057
Salix brachista GWHAAZH00000001 1 CH_sbr_419 2 2 0.000945209
Sequoiadendron giganteum chr9 1 CH_sgi_46 10 15 2.1254e-26
Sequoiadendron giganteum chr3 1 CH_sgi_656 3 3 0.00000548214
Solanum tuberosum ST4.03ch12 1 CH_stu_572 2 2 0.000512453
Solanum tuberosum ST4.03ch08 1 CH_stu_573 2 2 0.000512453
Theobroma cacao Chromosome_3 1 CH_tca_449 2 2 0.000732386
Tripterygium wilfordii NC_052251.1 1 CH_twi_132 3 5 0.00000391516
Vitis vinifera chr2 1 CH_vvi_438 2 2 0.00076063
Avicennia marina ScioBoG_102834_HRSCAF_103055 2 CH_ama_28 3 3 0.000000624499
Camellia sinensis var. sinensis Chr12 2 CH_camsi_308 4 27 0.000000354582
Cicer arietinum L. Ca_LG6_v3 2 CH_car_314 2 2 0.000778301
Cucumis melo chr09 2 CH_cme_312 2 2 0.000667111
Corchorus olitorius AWUE01022397.1 2 CH_col_95 2 2 0.000292099
Carica papaya supercontig_74 2 CH_cpa_355 2 2 0.000570396
Davidia involucrata GWHABJS00000003 2 CH_din_477 2 2 0.000500125
Fragaria x ananassa Fvb5-2 2 CH_fan_266 3 5 0.00000585333
Fragaria vesca Fvb5 2 CH_fve_74 4 6 0.00000000032196
Magnolia biondii Chr18 2 CH_mbi_67 5 9 0.00000000000676212
Malus domestica Chr06 2 CH_mdo_106 4 4 0.000000000163766
Malus domestica Chr14 2 CH_mdo_250 3 3 0.000000785171
Punica granatum NC_045127.1 2 CH_pgr_373 2 2 0.000750356
Prunus persica Pp05 2 CH_ppe_93 4 4 0.0000000000435902
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_330 3 4 0.000000800904
Striga asiatica scaffold385 2 CH_sas_160 2 2 0.000938057
Salix brachista GWHAAZH00000001 2 CH_sbr_419 2 2 0.000945209
Sequoiadendron giganteum chr9 2 CH_sgi_46 10 15 2.1254e-26
Sequoiadendron giganteum chr3 2 CH_sgi_656 3 3 0.00000548214
Solanum tuberosum ST4.03ch12 2 CH_stu_572 2 2 0.000512453
Solanum tuberosum ST4.03ch08 2 CH_stu_573 2 2 0.000512453
Theobroma cacao Chromosome_3 2 CH_tca_449 2 2 0.000732386
Tripterygium wilfordii NC_052251.1 2 CH_twi_132 3 5 0.00000391516
Vitis vinifera chr2 2 CH_vvi_438 2 2 0.00076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001