Functional clusters
Information
- Type MapMan
- Description Redox homeostasis.thiol-based redox regulation.thioredoxin activities.H-type thioredoxin
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr11 | 1 | CH_acertr_61 | 4 | 4 | 0.000000000520337 |
| Brassica carinata | ChrB03 | 1 | CH_bca_431 | 3 | 3 | 0.00000448617 |
| Brassica carinata | ChrC08 | 1 | CH_bca_579 | 3 | 5 | 0.0000448377 |
| Brassica oleracea | C6 | 1 | CH_bol_172 | 3 | 4 | 0.00000522985 |
| Cicer arietinum L. | Ca_LG2_v3 | 1 | CH_car_86 | 3 | 3 | 0.00000259878 |
| Chara braunii | BFEA01000292 | 1 | CH_cbr_113 | 2 | 2 | 0.000215781 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4244 | 1 | CH_cqu_280 | 3 | 4 | 0.0000153516 |
| Cucumis sativus L. | chr2 | 1 | CH_csa_144 | 3 | 3 | 0.0000029895 |
| Cucumis sativus L. | chr5 | 1 | CH_csa_287 | 3 | 10 | 0.00035785 |
| Daucus carota | DCARv2_Chr9 | 1 | CH_dca_83 | 4 | 5 | 0.00000000925881 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 1 | CH_eca_160 | 3 | 3 | 0.000000362441 |
| Glycine max | Gm18 | 1 | CH_gma_270 | 3 | 3 | 0.00000971367 |
| Glycine max | Gm02 | 1 | CH_gma_271 | 3 | 3 | 0.00000971367 |
| Glycine max | Gm01 | 1 | CH_gma_358 | 3 | 5 | 0.0000970556 |
| Lupinus albus | Lalb_Chr04 | 1 | CH_lal_30 | 5 | 5 | 0.000000000000882325 |
| Lotus japonicus | chr2 | 1 | CH_lja_72 | 4 | 4 | 0.000000000784392 |
| Manihot esculenta | Chromosome11 | 1 | CH_mes_15 | 11 | 19 | 2.86674e-27 |
| Medicago truncatula | chr5 | 1 | CH_mtr_461 | 3 | 5 | 0.000014174 |
| Petunia axillaris | Peaxi162Scf00209 | 1 | CH_pax_125 | 3 | 3 | 0.00000122515 |
| Punica granatum | NC_045132.1 | 1 | CH_pgr_142 | 3 | 3 | 0.00000185808 |
| Prunus persica | Pp01 | 1 | CH_ppe_286 | 3 | 5 | 0.0000183532 |
| Pisum sativum | chr2LG1 | 1 | CH_psa_237 | 3 | 9 | 0.0000565097 |
| Phaseolus vulgaris | Chr02 | 1 | CH_pvu_201 | 3 | 3 | 0.00000294754 |
| Solanum lycopersicum | SL4.0ch05 | 1 | CH_sly_264 | 3 | 6 | 0.0000227221 |
| Solanum pennellii | Spenn-ch05 | 1 | CH_spe_85 | 4 | 5 | 0.000000000943655 |
| Trochodendron aralioides | group12 | 1 | CH_tar_59 | 4 | 4 | 0.000000000464211 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 1 | CH_tpr_179 | 3 | 4 | 0.00000983004 |
| Vigna mungo | CM024074.1 | 1 | CH_vmu_129 | 3 | 3 | 0.00000227961 |
| Acer truncatum | chr11 | 2 | CH_acertr_61 | 4 | 4 | 0.000000000520337 |
| Brassica carinata | ChrB03 | 2 | CH_bca_431 | 3 | 3 | 0.00000448617 |
| Brassica carinata | ChrC08 | 2 | CH_bca_579 | 3 | 5 | 0.0000448377 |
| Brassica oleracea | C6 | 2 | CH_bol_172 | 3 | 4 | 0.00000522985 |
| Cicer arietinum L. | Ca_LG2_v3 | 2 | CH_car_86 | 3 | 3 | 0.00000259878 |
| Chara braunii | BFEA01000292 | 2 | CH_cbr_113 | 2 | 2 | 0.000215781 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4244 | 2 | CH_cqu_280 | 3 | 4 | 0.0000153516 |
| Cucumis sativus L. | chr2 | 2 | CH_csa_144 | 3 | 3 | 0.0000029895 |
| Cucumis sativus L. | chr5 | 2 | CH_csa_287 | 3 | 10 | 0.00035785 |
| Daucus carota | DCARv2_Chr9 | 2 | CH_dca_83 | 4 | 5 | 0.00000000925881 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 2 | CH_eca_160 | 3 | 3 | 0.000000362441 |
| Glycine max | Gm18 | 2 | CH_gma_270 | 3 | 3 | 0.00000971367 |
| Glycine max | Gm02 | 2 | CH_gma_271 | 3 | 3 | 0.00000971367 |
| Glycine max | Gm01 | 2 | CH_gma_358 | 3 | 5 | 0.0000970556 |
| Lupinus albus | Lalb_Chr04 | 2 | CH_lal_30 | 5 | 5 | 0.000000000000882325 |
| Lotus japonicus | chr2 | 2 | CH_lja_72 | 4 | 4 | 0.000000000784392 |
| Manihot esculenta | Chromosome11 | 2 | CH_mes_15 | 11 | 19 | 2.86674e-27 |
| Petunia axillaris | Peaxi162Scf00209 | 2 | CH_pax_125 | 3 | 3 | 0.00000122515 |
| Punica granatum | NC_045132.1 | 2 | CH_pgr_142 | 3 | 3 | 0.00000185808 |
| Prunus persica | Pp01 | 2 | CH_ppe_286 | 3 | 5 | 0.0000183532 |
| Pisum sativum | chr2LG1 | 2 | CH_psa_237 | 3 | 9 | 0.0000565097 |
| Phaseolus vulgaris | Chr02 | 2 | CH_pvu_201 | 3 | 3 | 0.00000294754 |
| Solanum lycopersicum | SL4.0ch05 | 2 | CH_sly_264 | 3 | 6 | 0.0000227221 |
| Solanum pennellii | Spenn-ch05 | 2 | CH_spe_85 | 4 | 5 | 0.000000000943655 |
| Trochodendron aralioides | group12 | 2 | CH_tar_59 | 4 | 4 | 0.000000000464211 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 2 | CH_tpr_179 | 3 | 4 | 0.00000983004 |
| Vigna mungo | CM024074.1 | 2 | CH_vmu_129 | 3 | 3 | 0.00000227961 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |