Functional clusters

Information

  • Type MapMan
  • Description Redox homeostasis.glutathione-based redox regulation.glutathione S-transferase activities.class phi glutathione S-transferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 1 CH_aag_55 3 6 0.0000162216
Aethionema arabicum LG-1 1 CH_aar_87 3 3 0.00000149828
Acer truncatum chr5 1 CH_acertr_95 4 8 0.0000000154398
Arabidopsis lyrata scaffold_1 1 CH_aly_61 4 4 0.000000000616864
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 1 CH_amhyb_37 3 3 0.000000106286
Aquilegia oxysepala CHR06 1 CH_aox_16 6 8 0.0000000000000566781
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 1 CH_arhy_271 3 3 0.000000611736
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 1 CH_arhy_272 3 3 0.000000611736
Arabidopsis thaliana Chr1 1 CH_ath_65 4 7 0.000000000756436
Amborella trichopoda AmTr_v1.0_scaffold00057 1 CH_atr_44 4 6 0.000000000338373
Brassica carinata ChrB03 1 CH_bca_149 4 4 0.0000000032801
Brassica carinata ChrB01 1 CH_bca_273 4 8 0.000000229299
Brassica carinata ChrC05 1 CH_bca_460 3 3 0.00000786879
Brassica napus A10 1 CH_bna_121 4 4 0.00000000214396
Brassica napus C05 1 CH_bna_339 3 3 0.00000592646
Brassica oleracea C5 1 CH_bol_149 3 3 0.00000155292
Camellia sinensis var. sinensis Chr11 1 CH_camsi_335 3 3 0.000000693893
Cannabis sativa NC_044370.1 1 CH_cansat_13 7 7 7.5791e-22
Corylus avellana 2 1 CH_cav_27 5 8 0.000000000000304737
Citrus clementina scaffold_4 1 CH_ccl_170 3 3 0.000000565268
Citrus clementina scaffold_3 1 CH_ccl_171 3 3 0.000000565268
Ceratophyllum demersum 6 1 CH_cde_275 2 2 0.000789796
Carpinus fangiana Cfa02 1 CH_cfa_9 8 12 1.00312e-22
Carya illinoinensis Chr07 1 CH_cil_63 6 12 0.00000000000000399216
Citrullus lanatus CG_Chr09 1 CH_cla_40 3 3 0.0000000472204
Cucumis melo chr01 1 CH_cme_37 4 4 0.00000000000445379
Carica papaya supercontig_9 1 CH_cpa_346 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_1710 1 CH_cqu_17 8 13 5.28116e-21
Chenopodium quinoa C_Quinoa_Scaffold_2244 1 CH_cqu_36 7 21 0.00000000000000200941
Capsella rubella scaffold_1 1 CH_cru_202 3 4 0.00000529125
Cucumis sativus L. chr7 1 CH_csa_97 3 3 0.0000000418111
Davidia involucrata GWHABJS00000007 1 CH_din_137 3 3 0.000000300133
Durio zibethinus NW_019167893.1 1 CH_dzi_134 3 5 0.00000180415
Erigeron canadensis Conyza_canadensis_scaffold:9 1 CH_eca_455 2 2 0.000448722
Eucalyptus grandis Chr08 1 CH_egr_112 7 9 5.74032e-18
Erythranthe guttata scaffold_4 1 CH_egut_170 3 3 0.000000159065
Helianthus annuus HanXRQChr01 1 CH_han_278 3 3 0.000000640626
Helianthus annuus HanXRQChr04 1 CH_han_52 6 16 0.0000000000000266113
Lotus japonicus chr6 1 CH_lja_75 4 5 0.00000000115167
Lonicera japonica GWHAAZE00000001 1 CH_lonja_208 3 3 0.000000188297
Magnolia biondii Chr19 1 CH_mbi_54 6 28 0.000000000000481888
Malus domestica Chr09 1 CH_mdo_134 4 5 0.00000000148849
Malus domestica Chr03 1 CH_mdo_310 3 4 0.00000483084
Malus domestica Chr17 1 CH_mdo_78 5 8 0.0000000000037919
Medicago truncatula chr1 1 CH_mtr_148 4 4 0.0000000000436978
Nelumbo nucifera chr3 1 CH_nnu_437 2 3 0.000654022
Nelumbo nucifera chr4 1 CH_nnu_438 2 2 0.000654022
Olea europaea chr20 1 CH_oeu_119 3 6 0.0000102526
Olea europaea chr16 1 CH_oeu_82 3 3 0.000000512889
Oryza sativa ssp. japonica chr01 1 CH_osa_18 7 28 0.00000000000000972683
Oryza sativa ssp. japonica chr03 1 CH_osa_180 3 5 0.0000190263
Petunia axillaris Peaxi162Scf00399 1 CH_pax_111 3 4 0.000000593943
Punica granatum NC_045132.1 1 CH_pgr_134 3 3 0.00000070945
Punica granatum NC_045134.1 1 CH_pgr_165 3 5 0.00000709158
Physcomitrium patens Chr17 1 CH_ppa_315 3 20 0.000767909
Populus trichocarpa Chr02 1 CH_ptr_95 4 4 0.0000000000405549
Quercus lobata 12 1 CH_qlo_7 12 15 1.34701e-36
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_335 3 5 0.000000834234
Rhododendron simsii chr13 1 CH_rsi_30 7 10 8.18972e-20
Salvia bowleyana GWHASIU00000006 1 CH_sbo_148 3 5 0.000000124197
Salix brachista GWHAAZH00000002 1 CH_sbr_54 5 12 0.0000000000432198
Sechium edule LG09 1 CH_sed_84 3 3 0.000000152696
Sequoiadendron giganteum chr2 1 CH_sgi_195 6 8 0.000000000000102549
Sequoiadendron giganteum chr8 1 CH_sgi_23 13 26 3.37012e-31
Sequoiadendron giganteum chr8 1 CH_sgi_341 5 9 0.000000000756937
Solanum lycopersicum SL4.0ch06 1 CH_sly_521 2 2 0.000586941
Schrenkiella parvula ch1-1 1 CH_spa_112 3 3 0.000000781109
Solanum pennellii Spenn-ch06 1 CH_spe_532 2 3 0.000800581
Selenicereus undatus Scaffold_19641 1 CH_sun_279 2 2 0.000726639
Selenicereus undatus Scaffold_19641 1 CH_sun_35 3 3 0.0000000792034
Trochodendron aralioides group16 1 CH_tar_207 3 12 0.0000118868
Theobroma cacao Chromosome_1 1 CH_tca_75 4 4 0.0000000000825063
Tarenaya hassleriana NW_010969548.1 1 CH_tha_63 3 3 0.00000087818
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_110 3 3 0.000000300841
Tripterygium wilfordii NC_052248.1 1 CH_twi_18 5 5 0.00000000000000913072
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_57 4 4 0.0000000000842619
Vitis vinifera chr7 1 CH_vvi_89 4 4 0.000000000166365
Zea mays 1 1 CH_zma_84 3 3 0.000000470605
Anthoceros agrestis Sc2ySwM_344 2 CH_aag_55 3 6 0.0000162216
Aethionema arabicum LG-1 2 CH_aar_87 3 3 0.00000149828
Acer truncatum chr5 2 CH_acertr_95 4 8 0.0000000154398
Arabidopsis lyrata scaffold_1 2 CH_aly_61 4 4 0.000000000616864
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 2 CH_amhyb_37 3 3 0.000000106286
Aquilegia oxysepala CHR06 2 CH_aox_16 6 8 0.0000000000000566781
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 2 CH_arhy_271 3 3 0.000000611736
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 2 CH_arhy_272 3 3 0.000000611736
Arabidopsis thaliana Chr1 2 CH_ath_65 4 7 0.000000000756436
Amborella trichopoda AmTr_v1.0_scaffold00057 2 CH_atr_44 4 6 0.000000000338373
Brassica carinata ChrB03 2 CH_bca_149 4 4 0.0000000032801
Brassica carinata ChrB01 2 CH_bca_273 4 8 0.000000229299
Brassica carinata ChrC05 2 CH_bca_460 3 3 0.00000786879
Brassica oleracea C5 2 CH_bol_149 3 3 0.00000155292
Camellia sinensis var. sinensis Chr11 2 CH_camsi_335 3 3 0.000000693893
Cannabis sativa NC_044370.1 2 CH_cansat_13 7 7 7.5791e-22
Corylus avellana 2 2 CH_cav_27 5 8 0.000000000000304737
Citrus clementina scaffold_4 2 CH_ccl_170 3 3 0.000000565268
Citrus clementina scaffold_3 2 CH_ccl_171 3 3 0.000000565268
Ceratophyllum demersum 6 2 CH_cde_275 2 2 0.000789796
Carpinus fangiana Cfa02 2 CH_cfa_9 8 12 1.00312e-22
Carya illinoinensis Chr07 2 CH_cil_63 6 12 0.00000000000000399216
Citrullus lanatus CG_Chr09 2 CH_cla_40 3 3 0.0000000472204
Cucumis melo chr01 2 CH_cme_37 4 4 0.00000000000445379
Carica papaya supercontig_9 2 CH_cpa_346 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_1710 2 CH_cqu_17 8 13 5.28116e-21
Chenopodium quinoa C_Quinoa_Scaffold_2244 2 CH_cqu_36 7 21 0.00000000000000200941
Capsella rubella scaffold_1 2 CH_cru_202 3 4 0.00000529125
Cucumis sativus L. chr7 2 CH_csa_97 3 3 0.0000000418111
Davidia involucrata GWHABJS00000007 2 CH_din_137 3 3 0.000000300133
Durio zibethinus NW_019167893.1 2 CH_dzi_134 3 5 0.00000180415
Erigeron canadensis Conyza_canadensis_scaffold:9 2 CH_eca_455 2 2 0.000448722
Eucalyptus grandis Chr08 2 CH_egr_112 7 9 5.74032e-18
Erythranthe guttata scaffold_4 2 CH_egut_170 3 3 0.000000159065
Helianthus annuus HanXRQChr01 2 CH_han_278 3 3 0.000000640626
Helianthus annuus HanXRQChr04 2 CH_han_52 6 16 0.0000000000000266113
Lotus japonicus chr6 2 CH_lja_75 4 5 0.00000000115167
Lonicera japonica GWHAAZE00000001 2 CH_lonja_208 3 3 0.000000188297
Magnolia biondii Chr19 2 CH_mbi_54 6 28 0.000000000000481888
Malus domestica Chr09 2 CH_mdo_134 4 5 0.00000000148849
Malus domestica Chr03 2 CH_mdo_310 3 4 0.00000483084
Malus domestica Chr17 2 CH_mdo_78 5 8 0.0000000000037919
Nelumbo nucifera chr3 2 CH_nnu_437 2 3 0.000654022
Nelumbo nucifera chr4 2 CH_nnu_438 2 2 0.000654022
Olea europaea chr20 2 CH_oeu_119 3 6 0.0000102526
Olea europaea chr16 2 CH_oeu_82 3 3 0.000000512889
Oryza sativa ssp. japonica chr01 2 CH_osa_18 7 28 0.00000000000000972683
Oryza sativa ssp. japonica chr03 2 CH_osa_180 3 5 0.0000190263
Petunia axillaris Peaxi162Scf00399 2 CH_pax_111 3 4 0.000000593943
Punica granatum NC_045132.1 2 CH_pgr_134 3 3 0.00000070945
Punica granatum NC_045134.1 2 CH_pgr_165 3 5 0.00000709158
Physcomitrium patens Chr17 2 CH_ppa_315 3 20 0.000767909
Populus trichocarpa Chr02 2 CH_ptr_95 4 4 0.0000000000405549
Quercus lobata 12 2 CH_qlo_7 12 15 1.34701e-36
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_335 3 5 0.000000834234
Rhododendron simsii chr13 2 CH_rsi_30 7 10 8.18972e-20
Salvia bowleyana GWHASIU00000006 2 CH_sbo_148 3 5 0.000000124197
Salix brachista GWHAAZH00000002 2 CH_sbr_54 5 12 0.0000000000432198
Sechium edule LG09 2 CH_sed_84 3 3 0.000000152696
Sequoiadendron giganteum chr2 2 CH_sgi_195 6 8 0.000000000000102549
Sequoiadendron giganteum chr8 2 CH_sgi_23 13 26 3.37012e-31
Sequoiadendron giganteum chr8 2 CH_sgi_341 5 9 0.000000000756937
Solanum lycopersicum SL4.0ch06 2 CH_sly_521 2 2 0.000586941
Schrenkiella parvula ch1-1 2 CH_spa_112 3 3 0.000000781109
Solanum pennellii Spenn-ch06 2 CH_spe_532 2 3 0.000800581
Selenicereus undatus Scaffold_19641 2 CH_sun_279 2 2 0.000726639
Selenicereus undatus Scaffold_19641 2 CH_sun_35 3 3 0.0000000792034
Trochodendron aralioides group16 2 CH_tar_207 3 12 0.0000118868
Theobroma cacao Chromosome_1 2 CH_tca_75 4 4 0.0000000000825063
Tarenaya hassleriana NW_010969548.1 2 CH_tha_63 3 3 0.00000087818
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_110 3 3 0.000000300841
Tripterygium wilfordii NC_052248.1 2 CH_twi_18 5 5 0.00000000000000913072
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_57 4 4 0.0000000000842619
Vitis vinifera chr7 2 CH_vvi_89 4 4 0.000000000166365
Zea mays 1 2 CH_zma_84 3 3 0.000000470605

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001