Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09160 Brassica carinata HOM05D002341 ORTHO05D003165 4.1e-53 211.1 103 100.0
BraA05t19697Z Brassica rapa HOM05D002341 ORTHO05D003165 1.0e-35 153.3 88 85.2
A05p07320 Brassica napus HOM05D002341 ORTHO05D003165 3.9e-35 151.4 88 84.1
BcaC02g12020 Brassica carinata HOM05D002341 ORTHO05D003165 8.6e-35 150.2 88 84.1
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 1.1e-34 149.8 88 80.7
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 1.5e-34 149.4 88 80.7
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
C04p60540 Brassica napus HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
Dinv30609 Davidia involucrata HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 79.5
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 79.5
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 1.9e-34 149.1 88 80.7
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 3.3e-34 148.3 88 78.4
Cpa.g.sc67.49 Carica papaya HOM05D002341 ORTHO05D003165 3.3e-34 148.3 88 79.5
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 3.3e-34 148.3 88 79.5
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 79.5
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 79.5
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 79.5
TAR383G0801 Trochodendron aralioides HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
TAR383G0916 Trochodendron aralioides HOM05D000467 ORTHO05D000379 4.3e-34 147.9 88 78.4
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 4.3e-34 147.9 88 78.4
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 79.5
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
CDE02G0999 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 79.5
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 79.5
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Eucgr.F03879 Eucalyptus grandis HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Gohir.A05G122851 Gossypium hirsutum HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Gohir.A10G073101 Gossypium hirsutum HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Gohir.D05G123700 Gossypium hirsutum HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Gohir.D10G077825 Gossypium hirsutum HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Sc10g0008090 Simmondsia chinensis HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 79.5
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 5.6e-34 147.5 88 78.4
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 7.3e-34 147.1 88 78.4
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 7.3e-34 147.1 88 79.5
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 7.3e-34 147.1 88 79.5
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 9.5e-34 146.7 88 78.4
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 9.5e-34 146.7 88 77.3
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 9.5e-34 146.7 88 78.4
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 9.5e-34 146.7 88 78.4
SHI11229 Sapria himalayana HOM05D002341 ORTHO05D003165 9.5e-34 146.7 97 74.2
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 9.5e-34 146.7 88 77.3
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 9.5e-34 146.7 88 79.5
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 77.3
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 77.3
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 77.3
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 77.3
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 77.3
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 77.3
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 77.3
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 77.3
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 78.4
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 78.4
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 78.4
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 78.4
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 1.2e-33 146.4 88 77.3
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
CSS0044190 Camellia sinensis var. sinensis HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
ECA247G2936 Erigeron canadensis HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 78.4
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 78.4
FAN05G3465 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 78.4
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 78.4
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 78.4
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 77.3
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 1.6e-33 146.0 88 78.4
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 2.1e-33 145.6 88 78.4
C04p08770 Brassica napus HOM05D002341 ORTHO05D003165 2.8e-33 145.2 88 83.0
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 2.8e-33 145.2 88 78.4
BolC4t22469H Brassica oleracea HOM05D002341 ORTHO05D003165 2.8e-33 145.2 88 83.0
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 2.8e-33 145.2 88 78.4
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 2.8e-33 145.2 88 77.3
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 3.6e-33 144.8 88 76.1
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 3.6e-33 144.8 88 76.1
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 3.6e-33 144.8 88 76.1
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 4.7e-33 144.4 88 76.1
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 4.7e-33 144.4 88 76.1
unitig_747.g21298 Utricularia gibba HOM05D002341 ORTHO05D003165 4.7e-33 144.4 88 76.1
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 6.2e-33 144.1 88 76.1
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 6.2e-33 144.1 88 76.1
SEGI_03160 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 6.2e-33 144.1 88 76.1
SEGI_15815 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 6.2e-33 144.1 88 76.1
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 8.1e-33 143.7 88 77.3
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 8.1e-33 143.7 88 77.3
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 1.4e-32 142.9 88 76.1
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 1.4e-32 142.9 88 75.0
AL7G40190 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 1.8e-32 142.5 88 76.1
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 1.8e-32 142.5 88 75.0
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 2.3e-32 142.1 88 76.1
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 2.3e-32 142.1 88 76.1
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 3.1e-32 141.7 88 76.1
C05p39600 Brassica napus HOM05D002341 ORTHO05D003165 3.1e-32 141.7 88 76.1
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 3.1e-32 141.7 88 75.0
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 5.2e-32 141.0 88 71.6
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 6.8e-32 140.6 88 77.3
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 6.8e-32 140.6 88 72.7
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 8.9e-32 140.2 96 71.9
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 1.2e-31 139.8 97 69.1
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 1.5e-31 139.4 88 72.7
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 1.5e-31 139.4 88 72.7
COL.COLO4_00260 Corchorus olitorius HOM05D002341 ORTHO05D003165 2.0e-31 139.0 88 73.9
Zm00001eb271550 Zea mays HOM05D002341 ORTHO05D003165 2.6e-31 138.7 97 68.0
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 3.4e-31 138.3 88 76.1
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 3.4e-31 138.3 88 75.0
Carub.0007s2659 Capsella rubella HOM05D002341 ORTHO05D003165 3.4e-31 138.3 88 73.9
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 5.8e-31 137.5 88 72.7
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 5.8e-31 137.5 88 69.3
ECA246G5065 Erigeron canadensis HOM05D002341 ORTHO05D003165 1.3e-30 136.3 88 71.6
HanXRQChr16g0508791 Helianthus annuus HOM05D002341 ORTHO05D003165 1.3e-30 136.3 88 72.7
Lalb_Chr04g0249401 Lupinus albus HOM05D002341 ORTHO05D003165 1.3e-30 136.3 88 71.6
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 1.7e-30 136.0 88 73.9
vmacro07672 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 1.7e-30 136.0 88 72.7
Zm00001eb337780 Zea mays HOM05D002341 ORTHO05D003165 1.7e-30 136.0 97 66.0
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 6.4e-30 134.0 88 67.0
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 6.4e-30 134.0 88 73.9
CARHR222120 Cardamine hirsuta HOM05D002341 ORTHO05D003165 1.9e-29 132.5 87 70.1
FvH4_6g43880 Fragaria vesca HOM05D002341 ORTHO05D003165 1.9e-29 132.5 88 71.6
BcaB02g09159 Brassica carinata HOM05D002341 ORTHO05D003165 2.4e-29 132.1 89 75.3
FAN05G4314 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.1e-29 131.3 88 70.5
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 7.1e-29 130.6 88 70.5
Cfa023699 Carpinus fangiana HOM05D002341 ORTHO05D003165 1.2e-28 129.8 88 64.8
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 1.6e-28 129.4 88 71.6
COL.COLO4_23573 Corchorus olitorius HOM05D002341 ORTHO05D003165 1.6e-28 129.4 89 73.0
HPP92_003044 Vanilla planifolia HOM05D002341 ORTHO05D003165 1.6e-28 129.4 78 78.2
vmacro02726 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 2.7e-28 128.6 84 73.8
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 3.5e-28 128.3 88 71.6
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 3.5e-28 128.3 88 67.0
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 7.8e-28 127.1 88 62.5
RcHm_v2.0_Chr2g0122691 Rosa chinensis HOM05D002341 ORTHO05D003165 8.6e-27 123.6 101 62.4
Thhalv10025834m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 2.4e-24 115.5 88 65.9
FAN02G2298 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.7e-20 102.1 69 68.1
TPR.G37161 Trifolium pratense HOM05D002341 ORTHO05D003165 1.0e-19 100.1 57 77.2
Rhsim08G0212600 Rhododendron simsii HOM05D002341 ORTHO05D003165 2.3e-19 99.0 60 71.7
Prupe.3G223400 Prunus persica HOM05D002341 ORTHO05D003165 1.5e-10 69.7 88 46.6
C04p60600 Brassica napus HOM05D002341 ORTHO05D003165 5.8e-07 57.8 68 48.5
Nitab4.5_0001200g0150 Nicotiana tabacum HOM05D002341 ORTHO05D003165 6.4e-06 54.3 32 84.4
Nitab4.5_0007065g0030 Nicotiana tabacum HOM05D002341 ORTHO05D003165 6.4e-06 54.3 32 84.4
TPR.G7701 Trifolium pratense HOM05D002341 ORTHO05D003165 6.4e-06 54.3 32 84.4


User provided reference genes

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