Gene: FAN05G4314

General Information

Structural Information

Species Fragaria x ananassa
Gene Identifier FAN05G4314
Transcript Identifier FAN05G4314.1
Gene Type Coding gene
Location Fvb6-3 : 5339118-5342140 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D002341
#Genes/#Species 290/99
Phylogenetic origin

ID ORTHO05D003165
#Genes/#Species 240/99
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate
Block Duplication Block duplicate

Labels

Identifiers

id maker-Fvb6-3-snap-gene-53.92.v1.0.a1
pacid 50501789

Descriptions

Short descriptions
Ortholog descriptions

Description PF01398//PF08084//PF10596//PF10597//PF12134 - JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB) // PROCT (NUC072) domain (PROCT) // U6-snRNA interacting domain of PrP8 (U6-snRNA_bdg) // U5-snRNA binding site 2 of PrP8 (U5_2-snRNA_bdg) // PRP8 domain IV core (PRP8_domainIV)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000398	IEA	InterPro	mRNA splicing, via spliceosome

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0030623	IEA	InterPro	U5 snRNA binding
GO:0005515	IEA	InterPro	protein binding
GO:0008237	IEA	InterPro	metallopeptidase activity
GO:0070122	IEA	InterPro	isopeptidase activity
GO:0017070	IEA	InterPro	U6 snRNA binding
GO:0003723	ISO	PLAZA Homology (enrichment)	RNA binding	HOM05D002341

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005681	IEA	InterPro	spliceosomal complex

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR043173	Prp8 RNase domain IV, fingers region
IPR043172	Prp8 RNase domain IV, palm region
IPR012984	PROCT domain
IPR027652	Pre-mRNA-processing-splicing factor 8
IPR021983	PRP8 domain IV core
IPR019581	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain
IPR019580	Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding
IPR012337	Ribonuclease H-like superfamily

Mapman id	Description
16.2.1.4.4	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF8/SUS2)