Gene: PGR102G3099

General Information

Structural Information

  • Species Punica granatum
  • Gene Identifier PGR102G3099
  • Transcript Identifier PGR102G3099.01
  • Gene Type Coding gene
  • Location NC_045129.1 : 13876932-13886690 : positive

Gene Family Information

  • ID HOM05D002341
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pid XP_031388444.1
  • name LOC116201363
  • name XM_031532584.1
  • id gene-LOC116201363
  • uniprot A0A218WBA0

Descriptions

  • product pre-mRNA-processing-splicing factor 8A
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0000380
ISO
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome AT1G80070
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006508
IEA
GOA Databaseproteolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G38780
GO:0030623
IEA
GOA DatabaseU5 snRNA binding
GO:0030623
IEA
InterProU5 snRNA binding
GO:0017070
IEA
GOA DatabaseU6 snRNA binding
GO:0017070
IEA
InterProU6 snRNA binding
GO:0008237
IEA
GOA Databasemetallopeptidase activity
GO:0008237
IEA
InterPrometallopeptidase activity
GO:0070122
IEA
GOA Databaseisopeptidase activity
GO:0070122
IEA
InterProisopeptidase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G38780
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IEA
InterProspliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019582 RNA recognition motif, spliceosomal PrP8
IPR021983 PRP8 domain IV core
IPR042516 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
IPR027652 Pre-mRNA-processing-splicing factor 8
IPR019581 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
IPR019580 Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding
IPR000555 JAB1/MPN/MOV34 metalloenzyme domain
IPR012337 Ribonuclease H-like superfamily
IPR043173 Prp8 RNase domain IV, fingers region
IPR012591 PRO8NT domain
IPR012592 PROCN domain
IPR012984 PROCT domain
IPR043172 Prp8 RNase domain IV, palm region
Mapman id Description
16.2.1.4.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF8/SUS2)