Gene: Solyc07g008880.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g008880.3
  • Transcript Identifier Solyc07g008880.3.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 3817495-3829746 : positive

Gene Family Information

  • ID HOM05D002341
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g008880.3.1
  • uniprot A0A3Q7I1D8
  • gene_id Solyc07g008880

Descriptions

  • Description Pre-mRNA-processing-splicing factor 8 (AHRD V3.3 *** A0A2G2Z1B3_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000380
ISO
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome AT1G80070
GO:0000244
IBA
GOA Databasespliceosomal tri-snRNP complex assembly
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006508
IEA
GOA Databaseproteolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008237
IEA
GOA Databasemetallopeptidase activity
GO:0008237
IEA
InterPrometallopeptidase activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G38780
GO:0030619
IBA
GOA DatabaseU1 snRNA binding
GO:0030620
IBA
GOA DatabaseU2 snRNA binding
GO:0030623
IBA
IEA
GOA DatabaseU5 snRNA binding
GO:0030623
IEA
InterProU5 snRNA binding
GO:0017070
IBA
IEA
GOA DatabaseU6 snRNA binding
GO:0017070
IEA
InterProU6 snRNA binding
GO:0097157
IBA
GOA Databasepre-mRNA intronic binding
GO:0070122
IEA
GOA Databaseisopeptidase activity
GO:0070122
IEA
InterProisopeptidase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G38780
GO:0005682
IBA
GOA DatabaseU5 snRNP
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IEA
InterProspliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012337 Ribonuclease H-like superfamily
IPR027652 Pre-mRNA-processing-splicing factor 8
IPR019580 Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding
IPR012591 PRO8NT domain
IPR000555 JAB1/MPN/MOV34 metalloenzyme domain
IPR019582 RNA recognition motif, spliceosomal PrP8
IPR012984 PROCT domain
IPR043173 Prp8 RNase domain IV, fingers region
IPR042516 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
IPR043172 Prp8 RNase domain IV, palm region
IPR021983 PRP8 domain IV core
IPR012592 PROCN domain
IPR019581 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
Mapman id Description
16.2.1.4.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF8/SUS2)