Gene: Lsat_1_v5_gn_1_34320

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_1_34320
  • Transcript Identifier Lsat_1_v5_gn_1_34320.2
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_1 : 38465344-38475048 : positive

Gene Family Information

  • ID HOM05D002341
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_1_34320.v5
  • pacid 38943545

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000380
ISO
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome AT1G80070

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0008237
IEA
InterPrometallopeptidase activity
GO:0070122
IEA
InterProisopeptidase activity
GO:0017070
IEA
InterProU6 snRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0030623
IEA
InterProU5 snRNA binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G38780

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
InterProspliceosomal complex
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G38780

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR043172 Prp8 RNase domain IV, palm region
IPR000555 JAB1/MPN/MOV34 metalloenzyme domain
IPR027652 Pre-mRNA-processing-splicing factor 8
IPR012337 Ribonuclease H-like superfamily
IPR042516 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
IPR019580 Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding
IPR043173 Prp8 RNase domain IV, fingers region
IPR019582 RNA recognition motif, spliceosomal PrP8
IPR021983 PRP8 domain IV core
IPR012591 PRO8NT domain
IPR019581 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
IPR012984 PROCT domain
IPR012592 PROCN domain
Mapman id Description
16.2.1.4.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF8/SUS2)