Gene: AT4G38780

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G38780
  • Transcript Identifier AT4G38780.1
  • Gene Type Coding gene
  • Location Chr4 : 18101438-18111029 : negative

Gene Family Information

  • ID HOM05D002341
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G38780.1
  • uniprot Q9T0I6

Descriptions

  • Description pre-mRNA-processing-splicing factor-like protein
  • Computational description Pre-mRNA-processing-splicing factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosomal complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PROCN (InterPro:IPR012592), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT1G80070.1); Has 803 Blast hits to 702 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 318; Fungi - 227; Plants - 60; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000244
IBA
Gene Ontologyspliceosomal tri-snRNP complex assembly1
GO:0006508
IEA
GOA Databaseproteolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030623
IEA
GOA DatabaseU5 snRNA binding
GO:0030623
IBA
Gene OntologyU5 snRNA binding1
GO:0030623
IEA
InterProU5 snRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0017070
IEA
GOA DatabaseU6 snRNA binding
GO:0017070
IBA
Gene OntologyU6 snRNA binding1
GO:0017070
IEA
InterProU6 snRNA binding
GO:0003729
IDA
GOA DatabasemRNA binding
GO:0003729
HDA
Gene OntologymRNA binding2
GO:0005515
IEA
InterProprotein binding
GO:0008237
IEA
Gene Ontologymetallopeptidase activity
GO:0008237
IEA
InterPrometallopeptidase activity
GO:0070122
IEA
Gene Ontologyisopeptidase activity
GO:0070122
IEA
InterProisopeptidase activity
GO:0030620
IBA
Gene OntologyU2 snRNA binding1
GO:0030619
IBA
Gene OntologyU1 snRNA binding1
GO:0097157
IBA
Gene Ontologypre-mRNA intronic binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma3
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IEA
InterProspliceosomal complex
GO:0005829
HDA
Gene Ontologycytosol4
GO:0005886
HDA
Gene Ontologyplasma membrane5
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:0005682
IBA
Gene OntologyU5 snRNP1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR043173 Prp8 RNase domain IV, fingers region
IPR042516 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
IPR019581 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
IPR027652 Pre-mRNA-processing-splicing factor 8
IPR019580 Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding
IPR000555 JAB1/MPN/MOV34 metalloenzyme domain
IPR021983 PRP8 domain IV core
IPR019582 RNA recognition motif, spliceosomal PrP8
IPR012984 PROCT domain
IPR012337 Ribonuclease H-like superfamily
IPR043172 Prp8 RNase domain IV, palm region
IPR012591 PRO8NT domain
IPR012592 PROCN domain
Mapman id Description
16.2.1.4.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF8/SUS2)