Gene: Cpa.g.sc67.49

General Information

Structural Information

Species Carica papaya
Gene Identifier Cpa.g.sc67.49
Transcript Identifier Cpa.t.sc67.49
Gene Type Coding gene
Location supercontig_67 : 686054-691935 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D002341
#Genes/#Species 290/99
Phylogenetic origin

ID ORTHO05D003165
#Genes/#Species 240/99
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

pacid 16424731
tid PAC:16424731
id evm.TU.supercontig_67.49

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000398	IEA	InterPro	mRNA splicing, via spliceosome
GO:0000380	ISO	PLAZA Integrative Orthology	alternative mRNA splicing, via spliceosome	AT1G80070

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0008237	IEA	InterPro	metallopeptidase activity
GO:0070122	IEA	InterPro	isopeptidase activity
GO:0030623	IEA	InterPro	U5 snRNA binding
GO:0017070	IEA	InterPro	U6 snRNA binding
GO:0003723	ISO	PLAZA Homology (enrichment)	RNA binding	HOM05D002341
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT4G38780

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005681	IEA	InterPro	spliceosomal complex
GO:0009506	ISO	PLAZA Integrative Orthology	plasmodesma	AT4G38780

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR012984	PROCT domain
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain
IPR019581	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
IPR027652	Pre-mRNA-processing-splicing factor 8
IPR012337	Ribonuclease H-like superfamily
IPR043173	Prp8 RNase domain IV, fingers region
IPR019580	Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding
IPR042516	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
IPR021983	PRP8 domain IV core

Mapman id	Description
16.2.1.4.4	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF8/SUS2)