Gene: Carub.0007s2659

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0007s2659
  • Transcript Identifier Carub.0007s2659.1
  • Gene Type Coding gene
  • Location scaffold_7 : 10095440-10099528 : positive

Gene Family Information

  • ID HOM05D002341
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0007s2659.v1.1
  • pacid 39235813
  • synonym Carubv10003969m.g

Descriptions

  • Description PF01398//PF08084//PF10596//PF10597//PF10598//PF12134 - JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB) // PROCT (NUC072) domain (PROCT) // U6-snRNA interacting domain of PrP8 (U6-snRNA_bdg) // U5-snRNA binding site 2 of PrP8 (U5_2-snRNA_bdg) // RNA recognition motif of the spliceosomal PrP8 (RRM_4) // PRP8 domain IV core (PRP8_domainIV)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0008237
IEA
InterPrometallopeptidase activity
GO:0070122
IEA
InterProisopeptidase activity
GO:0003723
IEA
InterProRNA binding
GO:0017070
IEA
InterProU6 snRNA binding
GO:0030623
IEA
InterProU5 snRNA binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G38780

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
InterProspliceosomal complex
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G38780

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000555 JAB1/MPN/MOV34 metalloenzyme domain
IPR042516 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
IPR019582 RNA recognition motif, spliceosomal PrP8
IPR021983 PRP8 domain IV core
IPR012337 Ribonuclease H-like superfamily
IPR043173 Prp8 RNase domain IV, fingers region
IPR019580 Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding
IPR043172 Prp8 RNase domain IV, palm region
IPR019581 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
IPR012984 PROCT domain
IPR027652 Pre-mRNA-processing-splicing factor 8
Mapman id Description
16.2.1.4.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF8/SUS2)