Gene: Cc00_g08660

General Information

Structural Information

  • Species Coffea canephora
  • Gene Identifier Cc00_g08660
  • Transcript Identifier Cc00_g08660.1
  • Gene Type Coding gene
  • Location chr0 : 73041609-73053282 : negative

Gene Family Information

  • ID HOM05D002341
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • UniProtKB B9MWN9
  • UniProtKB D7U143
  • UniProtKB P34369
  • UniProtKB Q6P2Q9
  • UniProtKB Q99PV0
  • UniProtKB B9RV85
  • id GSCOCG00012830001

Descriptions

  • Description Pre-mRNA-processing-splicing factor 8
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000380
ISO
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome AT1G80070

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0008237
IEA
InterPrometallopeptidase activity
GO:0070122
IEA
InterProisopeptidase activity
GO:0017070
IEA
InterProU6 snRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0030623
IEA
InterProU5 snRNA binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G38780

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
InterProspliceosomal complex
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G38780

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000555 JAB1/MPN/MOV34 metalloenzyme domain
IPR012591 PRO8NT domain
IPR012984 PROCT domain
IPR012592 PROCN domain
IPR019580 Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding
IPR021983 PRP8 domain IV core
IPR012337 Ribonuclease H-like superfamily
IPR019582 RNA recognition motif, spliceosomal PrP8
IPR027652 Pre-mRNA-processing-splicing factor 8
IPR042516 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
IPR043173 Prp8 RNase domain IV, fingers region
IPR019581 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
IPR043172 Prp8 RNase domain IV, palm region
Mapman id Description
16.2.1.4.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF8/SUS2)