Gene: vmacro07672

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro07672
  • Transcript Identifier vmacro07672-RA
  • Gene Type Coding gene
  • Location chr2_Vaccinium_macrocarpon_Stevens_v1 : 31868197-31869093 : positive

Gene Family Information

  • ID HOM05D002341
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro07672_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to PRP8A: Pre-mRNA-processing-splicing factor 8A (Arabidopsis thaliana OX=3702)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030623
ISO
PLAZA Homology (enrichment)U5 snRNA binding HOM05D002341
GO:0017070
ISO
PLAZA Homology (enrichment)U6 snRNA binding HOM05D002341
GO:0003723
ISO
PLAZA Homology (enrichment)RNA binding HOM05D002341
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D002341
GO:0070122
ISO
PLAZA Homology (enrichment)isopeptidase activity HOM05D002341
GO:0008237
ISO
PLAZA Homology (enrichment)metallopeptidase activity HOM05D002341

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
InterProspliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR021983 PRP8 domain IV core
IPR027652 Pre-mRNA-processing-splicing factor 8
IPR043172 Prp8 RNase domain IV, palm region
IPR012337 Ribonuclease H-like superfamily
IPR043173 Prp8 RNase domain IV, fingers region
Mapman id Description
35.1 not assigned.annotated