Gene: Eucgr.F03879

General Information

Structural Information

  • Species Eucalyptus grandis
  • Gene Identifier Eucgr.F03879
  • Transcript Identifier Eucgr.F03879.1
  • Gene Type Coding gene
  • Location Chr06 : 49491821-49501882 : negative

Gene Family Information

  • ID HOM05D002341
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 32053954
  • synonym Egrandis_v1_0.000092m
  • id Eucgr.F03879.v2.0

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000380
ISO
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome AT1G80070

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0030623
IEA
InterProU5 snRNA binding
GO:0017070
IEA
InterProU6 snRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G80070
GO:0070122
ISO
PLAZA Homology (enrichment)isopeptidase activity HOM05D002341
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G38780
GO:0008237
ISO
PLAZA Homology (enrichment)metallopeptidase activity HOM05D002341

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
InterProspliceosomal complex
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G38780

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012591 PRO8NT domain
IPR043172 Prp8 RNase domain IV, palm region
IPR012337 Ribonuclease H-like superfamily
IPR043173 Prp8 RNase domain IV, fingers region
IPR021983 PRP8 domain IV core
IPR012592 PROCN domain
IPR019582 RNA recognition motif, spliceosomal PrP8
IPR027652 Pre-mRNA-processing-splicing factor 8
IPR042516 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
IPR019581 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
IPR019580 Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding
Mapman id Description
16.2.1.4.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF8/SUS2)