Gene: CSS0044190
General Information
Structural Information
- Species Camellia sinensis var. sinensis
- Gene Identifier CSS0044190
- Transcript Identifier CSS0044190.1
- Gene Type Coding gene
- Location Chr15 : 32028649-32045302 : negative
Gene Family Information
- ID HOM05D002341
- #Genes/#Species 290/99
- Phylogenetic origin
- ID ORTHO05D003165
- #Genes/#Species 240/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid CSS0044190.1
Descriptions
- Description PREDICTED: pre-mRNA-processing-splicing factor 8 [Vitis vinifera]
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
GO:0000380 | ISO | PLAZA Integrative Orthology | alternative mRNA splicing, via spliceosome | AT1G80070 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005515 | IEA | InterPro | protein binding | |
GO:0008237 | IEA | InterPro | metallopeptidase activity | |
GO:0070122 | IEA | InterPro | isopeptidase activity | |
GO:0003723 | IEA | InterPro | RNA binding | |
GO:0030623 | IEA | InterPro | U5 snRNA binding | |
GO:0017070 | IEA | InterPro | U6 snRNA binding | |
GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT4G38780 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005681 | IEA | InterPro | spliceosomal complex | |
GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G38780 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR021983 | PRP8 domain IV core |
IPR043172 | Prp8 RNase domain IV, palm region |
IPR027652 | Pre-mRNA-processing-splicing factor 8 |
IPR042516 | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily |
IPR012592 | PROCN domain |
IPR012591 | PRO8NT domain |
IPR000555 | JAB1/MPN/MOV34 metalloenzyme domain |
IPR019582 | RNA recognition motif, spliceosomal PrP8 |
IPR019581 | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding |
IPR012984 | PROCT domain |
IPR019580 | Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding |
IPR012337 | Ribonuclease H-like superfamily |
IPR043173 | Prp8 RNase domain IV, fingers region |
Mapman id | Description |
---|---|
16.2.1.4.4 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF8/SUS2) |