Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Zjn_sc00009.1.g09930.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	2.7e-202	707.2	386	100.0
Zjn_sc00040.1.g01780.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	7.1e-110	400.2	387	68.2
Oropetium_20150105_12722	Oropetium thomaeum	HOM04x5M005753	ORTHO04x5M007082	2.6e-96	355.1	217	93.1
Sobic.003G317200	Sorghum bicolor	HOM04x5M005753	ORTHO04x5M007082	3.8e-95	351.3	217	90.8
Misin05G292600	Miscanthus sinensis	HOM04x5M005753	ORTHO04x5M007082	8.4e-95	350.1	217	90.8
Zm00001d043269	Zea mays B73	HOM04x5M005753	ORTHO04x5M007082	1.9e-94	349.0	217	90.8
Seita.5G340600	Setaria italica	HOM04x5M005753	ORTHO04x5M007082	7.1e-94	347.1	213	91.5
Zm00007a00050933	Zea mays B104	HOM04x5M005753	ORTHO04x5M007082	7.1e-94	347.1	217	90.3
Misin06G281600	Miscanthus sinensis	HOM04x5M005753	ORTHO04x5M007082	3.5e-93	344.7	217	89.9
Zm00001d012618	Zea mays B73	HOM04x5M005753	ORTHO04x5M007082	6.0e-93	344.0	217	89.4
Zm00007a00024916	Zea mays B104	HOM04x5M005753	ORTHO04x5M007082	6.0e-93	344.0	217	89.4
Bradi2g51800	Brachypodium distachyon	HOM04x5M005753	ORTHO04x5M007082	7.9e-93	343.6	217	87.1
LP036182	Lolium perenne	HOM04x5M005753	ORTHO04x5M007082	1.8e-92	342.4	215	90.2
PH01000267G1150	Phyllostachys edulis	HOM04x5M005753	ORTHO04x5M007082	3.9e-92	341.3	213	90.1
LOC_Os01g57260	Oryza sativa ssp. japonica	HOM04x5M005753	ORTHO04x5M007082	1.5e-91	339.3	217	88.9
OsR498G0102101700.01	Oryza sativa ssp. indica	HOM04x5M005753	ORTHO04x5M007082	1.5e-91	339.3	217	88.9
PH01000109G1220	Phyllostachys edulis	HOM04x5M005753	ORTHO04x5M007082	2.8e-90	335.1	217	87.6
OB01G42010	Oryza brachyantha	HOM04x5M000005	ORTHO04x5M000867	4.2e-86	321.2	204	89.7
Zm00008a033108	Zea mays PH207	HOM04x5M005753	ORTHO04x5M007082	3.1e-81	305.1	194	89.2
Pgl_GLEAN_10012920	Cenchrus americanus	HOM04x5M005753	ORTHO04x5M007082	1.5e-75	286.2	360	54.2
Aco014399	Ananas comosus	HOM04x5M005753	ORTHO04x5M007082	5.7e-75	284.3	216	77.8
p5.00_sc00259_p0012	Elaeis guineensis	HOM04x5M005753	ORTHO04x5M007082	4.1e-73	278.1	217	72.8
p5.00_sc00154_p0042	Elaeis guineensis	HOM04x5M005753	ORTHO04x5M007082	4.1e-73	278.1	217	74.2
TraesCS3B02G349400	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	4.1e-73	278.1	217	75.1
TraesCS3D02G314200	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	4.1e-73	278.1	217	71.9
TRITD3Bv1G178970	Triticum turgidum	HOM04x5M005753	ORTHO04x5M007082	4.1e-73	278.1	217	75.1
TraesCS3A02G317000	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	1.5e-72	276.2	217	76.5
TRITD3Av1G201290	Triticum turgidum	HOM04x5M005753	ORTHO04x5M007082	1.5e-72	276.2	217	76.5
Zm00008a013662	Zea mays PH207	HOM04x5M005753	ORTHO04x5M007082	2.6e-72	275.4	217	78.8
Ma08_g03290	Musa acuminata	HOM04x5M005753	ORTHO04x5M007082	1.2e-69	266.5	216	67.6
ASH_gene14924	Apostasia shenzhenica	HOM04x5M005753	ORTHO04x5M007082	2.1e-69	265.8	215	71.2
Ma10_g10040	Musa acuminata	HOM04x5M005753	ORTHO04x5M007082	7.9e-69	263.8	215	69.8
Solyc02g080270.2	Solanum lycopersicum	HOM04x5M005753	ORTHO04x5M007082	7.9e-69	263.8	221	62.9
Potri.004G035500	Populus trichocarpa	HOM04x5M005753	ORTHO04x5M007082	1.1e-67	260.0	218	61.9
GSVIVG01006715001	Vitis vinifera	HOM04x5M005753	ORTHO04x5M007082	6.3e-66	254.2	218	64.2
AT4G21560	Arabidopsis thaliana	HOM04x5M005753	ORTHO04x5M007082	9.1e-65	250.4	216	60.2
CALSI_Maker00015618	Calamus simplicifolius	HOM04x5M005753	ORTHO04x5M007082	1.5e-64	249.6	198	72.7
Potri.011G043800	Populus trichocarpa	HOM04x5M005753	ORTHO04x5M007082	2.0e-64	249.2	218	65.6
Solyc03g031750.1	Solanum lycopersicum	HOM04x5M005753	ORTHO04x5M007082	2.6e-64	248.8	216	61.1
AT4G05000	Arabidopsis thaliana	HOM04x5M005753	ORTHO04x5M007082	1.3e-63	246.5	216	58.8
Zosma467g00170	Zostera marina	HOM04x5M005753	ORTHO04x5M007082	2.5e-62	242.3	215	60.9
ATR1149G025	Amborella trichopoda	HOM04x5M005753	ORTHO04x5M007082	2.1e-61	239.2	215	58.1
PAB00012356	Picea abies	HOM04x5M005753	ORTHO04x5M007082	6.7e-60	234.2	212	57.5
gene13632	Selaginella moellendorffii	HOM04x5M005753	ORTHO04x5M007082	4.4e-59	231.5	211	58.3
gene12907	Selaginella moellendorffii	HOM04x5M005753	ORTHO04x5M007082	4.4e-59	231.5	211	58.3
Mapoly0186s0005	Marchantia polymorpha	HOM04x5M005753	ORTHO04x5M007082	7.4e-59	230.7	214	56.5
CALSI_Maker00002332	Calamus simplicifolius	HOM04x5M005753	ORTHO04x5M007082	2.2e-58	229.2	216	65.3
Pp3c17_18750	Physcomitrium patens	HOM04x5M005753	ORTHO04x5M007082	8.2e-58	227.3	214	54.7
Pp3c14_20060	Physcomitrium patens	HOM04x5M005753	ORTHO04x5M007082	2.0e-56	222.6	214	52.8
Cre16.g678100	Chlamydomonas reinhardtii	HOM04x5M005753	ORTHO04x5M007082	1.6e-40	169.9	224	42.9
Ma10_g09150	Musa acuminata	HOM04x5M000001	ORTHO04x5M000001	3.7e-18	95.5	87	54.0
MCO01G694	Micromonas commoda	HOM04x5M005753	ORTHO04x5M007082	1.9e-17	93.2	239	31.8
Zjn_sc00019.1.g01060.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	2.3e-15	86.3	60	73.3
Spipo8G0015400	Spirodela polyrhiza	HOM04x5M005753	ORTHO04x5M007082	3.1e-12	75.9	70	57.1
PEQU_04978	Phalaenopsis equestris	HOM04x5M005753	ORTHO04x5M007082	1.9e-09	66.6	53	66.0
Zm00007a00041295	Zea mays B104	HOM04x5M014912	ORTHO04x5M017882	6.6e-07	58.2	61	52.5
Zm00008a017941	Zea mays PH207	HOM04x5M014912	ORTHO04x5M017882	6.6e-07	58.2	61	52.5
Zm00008a034107	Zea mays PH207	HOM04x5M014912	ORTHO04x5M017882	1.1e-06	57.4	30	90.0
Zm00007a00012589	Zea mays B104	HOM04x5M012075	ORTHO04x5M014151	7.3e-06	54.7	46	65.2

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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