Interactive Phylogenetics Module

Gene Id
LOC_Os04g13470

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
LOC_Os04g13470 Oryza sativa ssp. japonica HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1711.8 911 100.0
OB04G13420 Oryza brachyantha HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1500.7 870 92.4
Seita.7G040600 Setaria italica HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1492.2 922 87.1
Sobic.006G021700 Sorghum bicolor HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1487.6 919 87.1
Bradi5g03600 Brachypodium distachyon HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1467.6 914 86.0
Sspon.05G0015580-1A Saccharum spontaneum HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1456.8 919 86.3
LP016714 Lolium perenne HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1445.6 924 83.8
TraesCS2A02G072500 Triticum aestivum HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1426.0 924 82.8
TraesCS2B02G086800 Triticum aestivum HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1420.6 924 82.7
Zm00001d004396 Zea mays B73 HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1412.9 920 83.0
Zm00007a00040572 Zea mays B104 HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1354.3 876 84.0
HORVU2Hr1G009840 Hordeum vulgare HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1315.4 835 83.8
Misin11G020700 Miscanthus sinensis HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1297.7 920 78.3
Zm00001d025044 Zea mays B73 HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1286.9 920 77.0
p5.00_sc00274_p0001 Elaeis guineensis HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1187.2 936 69.4
Misin12G026800 Miscanthus sinensis HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1181.0 763 84.3
Zm00008a007889 Zea mays PH207 HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1180.2 894 74.5
Ma04_g31780 Musa acuminata HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1175.2 937 68.3
Aco010402 Ananas comosus HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1167.5 934 68.1
PH01001849G0270 Phyllostachys edulis HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1136.3 737 85.9
ASH_gene4577 Apostasia shenzhenica HOM04x5M003865 ORTHO04x5M004528 0.0e+00 1112.1 928 65.2
Sspon.05G0015580-1P Saccharum spontaneum HOM04x5M003865 ORTHO04x5M004528 1.5e-310 1068.1 666 86.0
CALSI_Maker00049359 Calamus simplicifolius HOM04x5M003865 ORTHO04x5M004528 2.0e-310 1067.8 999 61.3
OsR498G0407745900.01 Oryza sativa ssp. indica HOM04x5M003865 ORTHO04x5M004528 2.9e-309 1063.9 561 99.8
TRITD2Av1G016840 Triticum turgidum HOM04x5M003865 ORTHO04x5M004528 6.9e-303 1042.7 691 80.8
TRITD2Bv1G022090 Triticum turgidum HOM04x5M003865 ORTHO04x5M004528 2.2e-301 1037.7 691 80.5
Zm00007a00006381 Zea mays B104 HOM04x5M003865 ORTHO04x5M004528 5.0e-293 1010.0 731 76.1
TraesCS2D02G071500 Triticum aestivum HOM04x5M003865 ORTHO04x5M004528 8.5e-293 1009.2 667 80.7
GSVIVG01037972001 Vitis vinifera HOM04x5M003865 ORTHO04x5M004528 3.5e-286 987.3 877 61.3
Oropetium_20150105_24314 Oropetium thomaeum HOM04x5M003865 ORTHO04x5M004528 6.3e-280 966.5 872 66.4
Potri.011G154000 Populus trichocarpa HOM04x5M003865 ORTHO04x5M004528 2.6e-278 961.1 958 57.0
Spipo11G0055700 Spirodela polyrhiza HOM04x5M003865 ORTHO04x5M004528 1.5e-265 918.7 944 56.8
AT4G19490 Arabidopsis thaliana HOM04x5M003865 ORTHO04x5M004528 3.4e-265 917.5 939 54.5
Pgl_GLEAN_10028515 Cenchrus americanus HOM04x5M003865 ORTHO04x5M004528 8.6e-261 902.9 552 87.7
p5.00_sc00379_p0001 Elaeis guineensis HOM04x5M003865 ORTHO04x5M004528 3.9e-245 850.9 759 63.4
PH01001508G0150 Phyllostachys edulis HOM04x5M003865 ORTHO04x5M004528 2.8e-243 844.7 543 84.7
evm.TU.AsparagusV1_10.1590.V1.1 Asparagus officinalis HOM04x5M003865 ORTHO04x5M004528 8.9e-242 839.7 709 65.3
Mapoly0095s0011 Marchantia polymorpha HOM04x5M003865 ORTHO04x5M004528 3.6e-235 817.8 1030 47.9
gene12953 Selaginella moellendorffii HOM04x5M003865 ORTHO04x5M004528 1.4e-226 789.3 926 50.1
gene13680 Selaginella moellendorffii HOM04x5M003865 ORTHO04x5M004528 3.1e-226 788.1 926 50.0
Pp3c11_18680 Physcomitrium patens HOM04x5M003865 ORTHO04x5M004528 6.4e-224 780.4 982 46.9
ATR1132G011 Amborella trichopoda HOM04x5M003865 ORTHO04x5M004528 1.4e-223 779.2 755 58.8
Solyc02g030110.2 Solanum lycopersicum HOM04x5M003865 ORTHO04x5M004528 7.3e-220 766.9 739 57.6
Potri.001G442900 Populus trichocarpa HOM04x5M003865 ORTHO04x5M004528 2.1e-219 765.4 761 57.0
Solyc02g069650.1 Solanum lycopersicum HOM04x5M003865 ORTHO04x5M004528 2.0e-217 758.8 740 57.0
CALSI_Maker00048477 Calamus simplicifolius HOM04x5M003865 ORTHO04x5M004528 2.2e-176 622.5 781 51.3
Pgl_GLEAN_10028516 Cenchrus americanus HOM04x5M003865 ORTHO04x5M004528 1.1e-164 583.6 370 84.1
Sspon.05G0015580-2D Saccharum spontaneum HOM04x5M003865 ORTHO04x5M004528 1.7e-144 516.5 322 86.6
Zosma349g00070 Zostera marina HOM04x5M003865 ORTHO04x5M004528 2.8e-134 482.6 478 57.7
Zm00008a037657 Zea mays PH207 HOM04x5M003865 ORTHO04x5M004528 6.8e-133 478.0 412 64.8
PEQU_01825 Phalaenopsis equestris HOM04x5M003865 ORTHO04x5M004528 6.9e-93 345.1 358 55.9
Sspon.05G0015570-1A Saccharum spontaneum HOM04x5M003865 ORTHO04x5M004528 4.6e-81 305.8 186 89.2
Zm00007a00006380 Zea mays B104 HOM04x5M003865 ORTHO04x5M004528 6.7e-80 302.0 188 86.7
Zjn_sc00042.1.g00670.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M003865 ORTHO04x5M004528 3.4e-76 289.7 188 84.6
Zosma112g00010 Zostera marina HOM04x5M003865 ORTHO04x5M004528 1.2e-73 281.2 274 57.3
PEQU_01468 Phalaenopsis equestris HOM04x5M003865 ORTHO04x5M004528 5.0e-59 232.6 154 74.0
PEQU_01922 Phalaenopsis equestris HOM04x5M003865 ORTHO04x5M004528 5.7e-55 219.2 193 62.2
ATR1132G122 Amborella trichopoda HOM04x5M003865 ORTHO04x5M004528 3.0e-48 196.8 196 55.1
Solyc02g030100.2 Solanum lycopersicum HOM04x5M003865 ORTHO04x5M004528 2.0e-47 194.1 188 56.9
Solyc02g069660.2 Solanum lycopersicum HOM04x5M003865 ORTHO04x5M004528 1.8e-45 187.6 186 54.8
Cre02.g087551 Chlamydomonas reinhardtii HOM04x5M003865 ORTHO04x5M004528 2.9e-43 180.3 923 25.5
Zosma253g00200 Zostera marina HOM04x5M003865 ORTHO04x5M004528 3.7e-38 163.3 143 60.8
MCO09G025 Micromonas commoda HOM04x5M003865 ORTHO04x5M004528 1.6e-33 147.9 916 23.5
evm.TU.AsparagusV1_03.1373.V1.1 Asparagus officinalis HOM04x5M003865 ORTHO04x5M004528 6.6e-27 125.9 98 71.4
PAB00056947 Picea abies HOM04x5M003865 ORTHO04x5M004528 5.6e-26 122.9 106 56.6
PAB00035948 Picea abies HOM04x5M003865 ORTHO04x5M004528 4.0e-24 116.7 90 64.4
PAB00041133 Picea abies HOM04x5M003865 ORTHO04x5M004528 7.0e-21 105.9 81 70.4
PH01002113G0100 Phyllostachys edulis HOM04x5M000083 ORTHO04x5M000288 2.0e-20 104.4 93 66.7

Amborella trichopoda (2 genes)
Ananas comosus (1 genes)
Apostasia shenzhenica (1 genes)
Arabidopsis thaliana (1 genes)
Asparagus officinalis (2 genes)
Brachypodium distachyon (1 genes)
Calamus simplicifolius (2 genes)
Cenchrus americanus (2 genes)
Chlamydomonas reinhardtii (1 genes)
Elaeis guineensis (2 genes)
Hordeum vulgare (1 genes)
Lolium perenne (1 genes)
Marchantia polymorpha (1 genes)
Micromonas commoda (1 genes)
Miscanthus sinensis (2 genes)
Musa acuminata (1 genes)
Oropetium thomaeum (1 genes)
Oryza brachyantha (1 genes)
Oryza sativa ssp. indica (1 genes)
Oryza sativa ssp. japonica (1 genes)
Phalaenopsis equestris (3 genes)
Phyllostachys edulis (3 genes)
Physcomitrium patens (1 genes)
Picea abies (3 genes)
Populus trichocarpa (2 genes)
Saccharum spontaneum (4 genes)
Selaginella moellendorffii (2 genes)
Setaria italica (1 genes)
Solanum lycopersicum (4 genes)
Sorghum bicolor (1 genes)
Spirodela polyrhiza (1 genes)
Triticum aestivum (3 genes)
Triticum turgidum (2 genes)
Vitis vinifera (1 genes)
Zea mays B73 (2 genes)
Zea mays B104 (3 genes)
Zea mays PH207 (2 genes)
Zostera marina (3 genes)
Zoysia japonica ssp. nagirizaki (1 genes)

Program Settings