Gene: AT4G19490 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G19490
Transcript Identifier
AT4G19490.2
Gene Type
Coding gene
Location
Chr4 : 10616017-10622934 : positive

Family Information

Homologous gene family
HOM04x5M003865
(70 genes in 39 species)
specific family
Orthologous gene family
ORTHO04x5M004528
(70 genes in 39 species)
specific family

Descriptions

Description
VPS54
Curated Summary
Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system.
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Identifiers

Type Value
DbxrefPMID:15028209,PMID:21166475,gene:1005714184,UniProt:F4JT76
tidAT4G19490.2

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042147
IBA
Gene Ontologyretrograde transport, endosome to Golgi1
GO:0042147
IEA
InterProretrograde transport, endosome to Golgi
GO:0006896
IBA
Gene OntologyGolgi to vacuole transport1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019905
IBA
Gene Ontologysyntaxin binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000938
IBA
Gene OntologyGARP complex1
GO:0000938
IEA
InterProGARP complex
GO:0005794
ISM
Gene OntologyGolgi apparatus2
GO:0009507
IDA
Gene Ontologychloroplast3 4
GO:0005829
RCA
Gene Ontologycytosol5 6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR039745Vacuolar protein sorting-associated protein 54
IPR012501Vacuolar protein sorting-associated protein 54, C-terminal

Mapman id Description
22.6.1.4Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.GARP-specific component VPS54