Functional clusters

Information

  • Type Gene Ontology
  • Description cellular catabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Magnolia biondii Chr19 3 CH_mbi_219 11 30 0.000000223155
Nelumbo nucifera chr5 3 CH_nnu_179 12 56 0.0000457478
Quercus lobata 9 3 CH_qlo_645 15 65 0.0000148536
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_166 10 21 0.00000933363
Magnolia biondii Chr19 4 CH_mbi_219 11 30 0.000000223155
Nelumbo nucifera chr5 4 CH_nnu_179 12 56 0.0000457478
Quercus lobata 9 4 CH_qlo_645 15 65 0.0000148536
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_166 10 21 0.00000933363

Available child term results

Ontology identifier Description Number of clusters
GO:0000025 maltose catabolic process 2
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 18
GO:0000256 allantoin catabolic process 2
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0000292 RNA fragment catabolic process 4
GO:0000422 autophagy of mitochondrion 16
GO:0000737 DNA catabolic process, endonucleolytic 16
GO:0001561 fatty acid alpha-oxidation 42
GO:0005983 starch catabolic process 4
GO:0005987 sucrose catabolic process 4
GO:0005993 trehalose catabolic process 4
GO:0006148 inosine catabolic process 18
GO:0006154 adenosine catabolic process 38
GO:0006210 thymine catabolic process 10
GO:0006308 DNA catabolic process 40
GO:0006511 ubiquitin-dependent protein catabolic process 154
GO:0006516 glycoprotein catabolic process 2
GO:0006559 L-phenylalanine catabolic process 6
GO:0006562 proline catabolic process 4
GO:0006569 tryptophan catabolic process 18
GO:0006572 tyrosine catabolic process 6
GO:0006574 valine catabolic process 4
GO:0006581 acetylcholine catabolic process 2
GO:0006635 fatty acid beta-oxidation 6
GO:0006680 glucosylceramide catabolic process 10
GO:0006788 heme oxidation 2
GO:0006914 autophagy 12
GO:0009134 nucleoside diphosphate catabolic process 2
GO:0009143 nucleoside triphosphate catabolic process 14
GO:0009166 nucleotide catabolic process 2
GO:0009407 toxin catabolic process 88
GO:0009440 cyanate catabolic process 4
GO:0009972 cytidine deamination 8
GO:0010133 proline catabolic process to glutamate 4
GO:0010304 PSII associated light-harvesting complex II catabolic process 2
GO:0010498 proteasomal protein catabolic process 2
GO:0010506 regulation of autophagy 4
GO:0010507 negative regulation of autophagy 2
GO:0010896 regulation of triglyceride catabolic process 8
GO:0015938 coenzyme A catabolic process 2
GO:0016075 rRNA catabolic process 6
GO:0016121 carotene catabolic process 4
GO:0016124 xanthophyll catabolic process 12
GO:0016598 protein arginylation 2
GO:0016998 cell wall macromolecule catabolic process 8
GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione 6
GO:0019310 inositol catabolic process 56
GO:0019433 triglyceride catabolic process 10
GO:0019439 aromatic compound catabolic process 2
GO:0019447 D-cysteine catabolic process 12
GO:0019450 L-cysteine catabolic process to pyruvate 8
GO:0019458 methionine catabolic process via 2-oxobutanoate 10
GO:0019464 glycine decarboxylation via glycine cleavage system 4
GO:0019481 L-alanine catabolic process, by transamination 8
GO:0019500 cyanide catabolic process 2
GO:0019544 arginine catabolic process to glutamate 2
GO:0019563 glycerol catabolic process 2
GO:0019762 glucosinolate catabolic process 12
GO:0030242 autophagy of peroxisome 24
GO:0030245 cellulose catabolic process 8
GO:0030327 prenylated protein catabolic process 12
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 30
GO:0031145 anaphase-promoting complex-dependent catabolic process 2
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 6
GO:0031998 regulation of fatty acid beta-oxidation 2
GO:0033355 ascorbate glutathione cycle 22
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase 2
GO:0033542 fatty acid beta-oxidation, unsaturated, even number 8
GO:0034263 positive regulation of autophagy in response to ER overload 2
GO:0034655 nucleobase-containing compound catabolic process 2
GO:0042167 heme catabolic process 4
GO:0042178 xenobiotic catabolic process 10
GO:0042183 formate catabolic process 2
GO:0042344 indole glucosinolate catabolic process 2
GO:0042744 hydrogen peroxide catabolic process 346
GO:0042758 long-chain fatty acid catabolic process 2
GO:0042760 very long-chain fatty acid catabolic process 2
GO:0043137 DNA replication, removal of RNA primer 2
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0043419 urea catabolic process 4
GO:0043632 modification-dependent macromolecule catabolic process 4
GO:0044242 cellular lipid catabolic process 2
GO:0044257 cellular protein catabolic process 2
GO:0044265 cellular macromolecule catabolic process 12
GO:0044273 sulfur compound catabolic process 2
GO:0045339 farnesyl diphosphate catabolic process 14
GO:0045493 xylan catabolic process 76
GO:0046244 salicylic acid catabolic process 42
GO:0046256 2,4,6-trinitrotoluene catabolic process 26
GO:0046274 lignin catabolic process 2
GO:0046340 diacylglycerol catabolic process 8
GO:0046345 abscisic acid catabolic process 16
GO:0046395 carboxylic acid catabolic process 6
GO:0046466 membrane lipid catabolic process 4
GO:0046514 ceramide catabolic process 6
GO:0048255 mRNA stabilization 4
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 2
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 26
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0071211 protein targeting to vacuole involved in autophagy 8
GO:0071562 nucleus-vacuole junction assembly 2
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 26
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:0072523 purine-containing compound catabolic process 2
GO:0090410 malonate catabolic process 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901606 alpha-amino acid catabolic process 8
GO:1901799 negative regulation of proteasomal protein catabolic process 2
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1901811 beta-carotene catabolic process 10
GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process 6
GO:1903647 negative regulation of chlorophyll catabolic process 10
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1905037 autophagosome organization 4
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 12
GO:2000786 positive regulation of autophagosome assembly 2
GO:2001294 malonyl-CoA catabolic process 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001