Functional clusters
Information
- Type Gene Ontology
- Description autophagy
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr5 | 3 | CH_acertr_335 | 3 | 3 | 0.0000920022 |
Brassica carinata | ChrB06 | 3 | CH_bca_663 | 3 | 3 | 0.000178302 |
Magnolia biondii | Chr01 | 3 | CH_mbi_638 | 3 | 5 | 0.000692244 |
Quercus lobata | 4 | 3 | CH_qlo_435 | 5 | 12 | 0.000000108911 |
Simmondsia chinensis | GWHAASQ00000019 | 3 | CH_sci_68 | 5 | 10 | 0.000000231428 |
Vitis vinifera | chr19 | 3 | CH_vvi_366 | 3 | 4 | 0.000398067 |
Acer truncatum | chr5 | 4 | CH_acertr_335 | 3 | 3 | 0.0000920022 |
Brassica carinata | ChrB06 | 4 | CH_bca_663 | 3 | 3 | 0.000178302 |
Magnolia biondii | Chr01 | 4 | CH_mbi_638 | 3 | 5 | 0.000692244 |
Quercus lobata | 4 | 4 | CH_qlo_435 | 5 | 12 | 0.000000108911 |
Simmondsia chinensis | GWHAASQ00000019 | 4 | CH_sci_68 | 5 | 10 | 0.000000231428 |
Vitis vinifera | chr19 | 4 | CH_vvi_366 | 3 | 4 | 0.000398067 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000422 | autophagy of mitochondrion | 16 |
GO:0010506 | regulation of autophagy | 4 |
GO:0010507 | negative regulation of autophagy | 2 |
GO:0030242 | autophagy of peroxisome | 24 |
GO:0034263 | positive regulation of autophagy in response to ER overload | 2 |
GO:0071211 | protein targeting to vacuole involved in autophagy | 8 |
GO:0071562 | nucleus-vacuole junction assembly | 2 |
GO:1905037 | autophagosome organization | 4 |
GO:2000786 | positive regulation of autophagosome assembly | 2 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |