Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.DNA methylation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Chenopodium quinoa C_Quinoa_Scaffold_2487 1 CH_cqu_399 4 8 0.000251325
Chenopodium quinoa C_Quinoa_Scaffold_2487 2 CH_cqu_399 4 8 0.000251325

Available child term results

Ontology identifier Description Number of clusters
12.5.1.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.methyl-DNA-binding factor (SUVH2/9) 6
12.5.1.10 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RDR2-polymerase accessory protein (CLSY1/2) 2
12.5.1.11 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.de novo DNA methylase (DRM) 6
12.5.1.12 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.ribonuclease (RTL2) 22
12.5.1.13 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.siRNA-integrating factor (AGO) 38
12.5.1.14.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component DRD1 12
12.5.1.14.2 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component DMS3 6
12.5.1.14.3 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component RDM1 24
12.5.1.15.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway.protein factor (NERD) 4
12.5.1.15.2 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway.siRNA-binding factor (AGO2) 49
12.5.1.16.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.downstream SUVH-DNAJ methylation reader complex.methylated DNA binding component SUVH1/3 8
12.5.1.16.2 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.downstream SUVH-DNAJ methylation reader complex.chaperone component DNAJ1/2 5
12.5.1.2 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.auxiliary factor (MORC) 21
12.5.1.3 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.stabilization factor (SGS3) 26
12.5.1.4 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.regulatory protein (IDN/IDP) 33
12.5.1.6 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RNA polymerase-IV/V auxiliary factor (RDM4) 11
12.5.1.8 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.endoribonuclease (DCL3) 6
12.5.2 Chromatin organisation.DNA methylation.RNA-independent DNA methylation 2
12.5.2.2 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA methyltransferase (MET) 10
12.5.2.3 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.regulatory cofactor (ORTH/VIM) 24
12.5.2.4 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA chromomethylase (CMT) 9
12.5.2.5.1 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.ASI1-AIPP1-EDM2 chromatin silencing regulator complex.component ASI1/IBM2 16
12.5.2.5.2 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.ASI1-AIPP1-EDM2 chromatin silencing regulator complex.component AIPP1/EDM3 10
12.5.2.5.3 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.ASI1-AIPP1-EDM2 chromatin silencing regulator complex.component EDM2 4
12.5.2.6.1 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.BRAT1-BRP1 anti-silencing regulator complex.component BRAT1 4
12.5.2.6.2 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.BRAT1-BRP1 anti-silencing regulator complex.component BRP1 2
12.5.3.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1) 6
12.5.3.2.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex.methylation reader component MBD7 13
12.5.3.2.3 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex.component IDM2/IDM3 2
12.5.3.2.4 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex.transposon-derived factor HDP1 6
12.5.4.1 Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD1-4/12) 26
12.5.4.2 Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD5-6) 8
12.5.4.3 Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD10-11) 11

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001