Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.ribonuclease (RTL2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00007 1 CH_atr_240 2 3 0.000238313
Camellia sinensis var. sinensis Chr5 1 CH_camsi_658 2 2 0.000137564
Cucumis melo chr06 1 CH_cme_188 2 2 0.0000667111
Chenopodium quinoa C_Quinoa_Scaffold_1373 1 CH_cqu_370 2 2 0.000142146
Eutrema salsugineum scaffold_20 1 CH_esa_256 2 2 0.00022845
Helianthus annuus HanXRQChr17 1 CH_han_436 2 2 0.0000386429
Malus domestica Chr11 1 CH_mdo_568 2 2 0.000227527
Malus domestica Chr03 1 CH_mdo_569 2 2 0.000227527
Quercus lobata 8 1 CH_qlo_973 2 2 0.000516289
Quercus lobata 9 1 CH_qlo_974 2 2 0.000516289
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_483 2 2 0.0000398653
Amborella trichopoda AmTr_v1.0_scaffold00007 2 CH_atr_240 2 3 0.000238313
Camellia sinensis var. sinensis Chr5 2 CH_camsi_658 2 2 0.000137564
Cucumis melo chr06 2 CH_cme_188 2 2 0.0000667111
Chenopodium quinoa C_Quinoa_Scaffold_1373 2 CH_cqu_370 2 2 0.000142146
Eutrema salsugineum scaffold_20 2 CH_esa_256 2 2 0.00022845
Helianthus annuus HanXRQChr17 2 CH_han_436 2 2 0.0000386429
Malus domestica Chr11 2 CH_mdo_568 2 2 0.000227527
Malus domestica Chr03 2 CH_mdo_569 2 2 0.000227527
Quercus lobata 8 2 CH_qlo_973 2 2 0.000516289
Quercus lobata 9 2 CH_qlo_974 2 2 0.000516289
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_483 2 2 0.0000398653

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001