Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.stabilization factor (SGS3)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00099 1 CH_atr_318 2 3 0.000714919
Capsicum annuum PGAv.1.6.scaffold243 1 CH_can_385 2 4 0.000495622
Chenopodium quinoa C_Quinoa_Scaffold_3429 1 CH_cqu_371 2 2 0.000142146
Daucus carota DCARv2_Chr6 1 CH_dca_109 3 4 0.0000000976195
Gossypium raimondii Chr11 1 CH_gra_445 2 2 0.00080416
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_401 2 2 0.000154202
Manihot esculenta Chromosome04 1 CH_mes_497 2 2 0.000915947
Oryza sativa ssp. japonica chr12 1 CH_osa_257 2 3 0.000158433
Populus trichocarpa Chr03 1 CH_ptr_35 6 6 3.0491e-18
Salix brachista GWHAAZH00000003 1 CH_sbr_55 4 4 0.0000000000525497
Sequoiadendron giganteum chr3 1 CH_sgi_1366 2 2 0.000730727
Sequoiadendron giganteum chr2 1 CH_sgi_553 3 4 0.000000284764
Trifolium pratense Tp57577_TGAC_v2_scaf_291 1 CH_tpr_319 2 2 0.000227092
Amborella trichopoda AmTr_v1.0_scaffold00099 2 CH_atr_318 2 3 0.000714919
Capsicum annuum PGAv.1.6.scaffold243 2 CH_can_385 2 4 0.000495622
Chenopodium quinoa C_Quinoa_Scaffold_3429 2 CH_cqu_371 2 2 0.000142146
Daucus carota DCARv2_Chr6 2 CH_dca_109 3 4 0.0000000976195
Gossypium raimondii Chr11 2 CH_gra_445 2 2 0.00080416
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_401 2 2 0.000154202
Manihot esculenta Chromosome04 2 CH_mes_497 2 2 0.000915947
Oryza sativa ssp. japonica chr12 2 CH_osa_257 2 3 0.000158433
Populus trichocarpa Chr03 2 CH_ptr_35 6 6 3.0491e-18
Salix brachista GWHAAZH00000003 2 CH_sbr_55 4 4 0.0000000000525497
Sequoiadendron giganteum chr3 2 CH_sgi_1366 2 2 0.000730727
Sequoiadendron giganteum chr2 2 CH_sgi_553 3 4 0.000000284764
Trifolium pratense Tp57577_TGAC_v2_scaf_291 2 CH_tpr_319 2 2 0.000227092

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001