Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RNA polymerase-IV/V auxiliary factor (RDM4)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_7 1 CH_amhyb_145 2 2 0.0000841751
Papaver somniferum NC_039362.1 1 CH_pso_586 2 2 0.000337849
Papaver somniferum NC_039360.1 1 CH_pso_587 2 2 0.000337849
Quercus lobata 1 1 CH_qlo_768 2 3 0.000154883
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_243 2 2 0.0000756974
Amaranthus hybridus AmaHy_arrow1_Scaffold_7 2 CH_amhyb_145 2 2 0.0000841751
Lotus japonicus chr1 2 CH_lja_273 2 2 0.0000715077
Papaver somniferum NC_039362.1 2 CH_pso_586 2 2 0.000337849
Papaver somniferum NC_039360.1 2 CH_pso_587 2 2 0.000337849
Quercus lobata 1 2 CH_qlo_768 2 3 0.000154883
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_243 2 2 0.0000756974

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001