Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component RDM1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 1 CH_acertr_548 2 2 0.00070497
Brassica carinata ChrC01 1 CH_bca_691 2 2 0.000128259
Cicer arietinum L. Ca_LG8_v3 1 CH_car_222 2 2 0.00023349
Chenopodium quinoa C_Quinoa_Scaffold_2716 1 CH_cqu_578 2 4 0.000852811
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_342 2 2 0.000134617
Medicago truncatula chr5 1 CH_mtr_247 3 6 0.0000000253208
Pisum sativum chr2LG1 1 CH_psa_210 2 2 0.0000521635
Salvia bowleyana GWHASIU00000007 1 CH_sbo_318 2 3 0.000136491
Solanum lycopersicum SL4.0ch09 1 CH_sly_90 4 7 0.000000000106148
Solanum pennellii Spenn-ch09 1 CH_spe_160 3 6 0.000000237384
Solanum tuberosum ST4.03ch10 1 CH_stu_49 6 20 0.00000000000000862345
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_214 2 2 0.0000756974
Acer truncatum chr1 2 CH_acertr_548 2 2 0.00070497
Brassica carinata ChrC01 2 CH_bca_691 2 2 0.000128259
Cicer arietinum L. Ca_LG8_v3 2 CH_car_222 2 2 0.00023349
Chenopodium quinoa C_Quinoa_Scaffold_2716 2 CH_cqu_578 2 4 0.000852811
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_342 2 2 0.000134617
Lotus japonicus chr1 2 CH_lja_364 2 2 0.000429046
Pisum sativum chr2LG1 2 CH_psa_210 2 2 0.0000521635
Salvia bowleyana GWHASIU00000007 2 CH_sbo_318 2 3 0.000136491
Solanum lycopersicum SL4.0ch09 2 CH_sly_90 4 7 0.000000000106148
Solanum pennellii Spenn-ch09 2 CH_spe_160 3 6 0.000000237384
Solanum tuberosum ST4.03ch10 2 CH_stu_49 6 20 0.00000000000000862345
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_214 2 2 0.0000756974

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001