Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.regulatory protein (IDN/IDP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 1 CH_aag_3 10 57 1.25828e-19
Camellia sinensis var. sinensis Chr11 1 CH_camsi_736 2 2 0.000275128
Ceratophyllum demersum 2 1 CH_cde_185 2 2 0.000236939
Carica papaya supercontig_81 1 CH_cpa_347 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_3422 1 CH_cqu_209 3 4 0.00000113139
Davidia involucrata GWHABJS00000007 1 CH_din_505 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_413 3 18 0.00029513
Gossypium raimondii Chr10 1 CH_gra_424 2 2 0.000536107
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_500 2 2 0.000514007
Magnolia biondii Chr14 1 CH_mbi_53 5 10 0.000000000000220768
Medicago truncatula chr2 1 CH_mtr_340 3 3 0.00000055708
Papaver somniferum NW_020624377.1 1 CH_pso_161 4 6 0.00000000375998
Solanum pennellii Spenn-ch06 1 CH_spe_208 3 5 0.00000652656
Solanum tuberosum ST4.03ch03 1 CH_stu_608 2 2 0.000768679
Tarenaya hassleriana NW_010968505.1 1 CH_tha_182 2 2 0.000419082
Vitis vinifera chr11 1 CH_vvi_387 2 2 0.000456378
Anthoceros agrestis Sc2ySwM_228 2 CH_aag_3 10 57 1.25828e-19
Camellia sinensis var. sinensis Chr11 2 CH_camsi_736 2 2 0.000275128
Ceratophyllum demersum 2 2 CH_cde_185 2 2 0.000236939
Carica papaya supercontig_81 2 CH_cpa_347 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_3422 2 CH_cqu_209 3 4 0.00000113139
Davidia involucrata GWHABJS00000007 2 CH_din_505 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_413 3 18 0.00029513
Gossypium hirsutum A06 2 CH_ghi_905 2 2 0.000961256
Gossypium hirsutum D06 2 CH_ghi_906 2 2 0.000961256
Gossypium raimondii Chr10 2 CH_gra_424 2 2 0.000536107
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_500 2 2 0.000514007
Magnolia biondii Chr14 2 CH_mbi_53 5 10 0.000000000000220768
Papaver somniferum NW_020624377.1 2 CH_pso_161 4 6 0.00000000375998
Solanum pennellii Spenn-ch06 2 CH_spe_208 3 5 0.00000652656
Solanum tuberosum ST4.03ch03 2 CH_stu_608 2 2 0.000768679
Tarenaya hassleriana NW_010968505.1 2 CH_tha_182 2 2 0.000419082
Vitis vinifera chr11 2 CH_vvi_387 2 2 0.000456378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001