Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.DNA methylation.RNA-independent DNA methylation.regulatory cofactor (ORTH/VIM)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_2 1 CH_aly_422 2 2 0.000660044
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 1 CH_arhy_530 3 60 0.000183757
Capsella rubella scaffold_6 1 CH_cru_421 2 2 0.000731154
Capsella rubella scaffold_2 1 CH_cru_422 2 2 0.000731154
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_276 2 2 0.0000448722
Helianthus annuus HanXRQChr17 1 CH_han_582 2 2 0.000231857
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_378 2 3 0.000154198
Pisum sativum chr6LG2 1 CH_psa_141 3 6 0.00000081617
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_732 2 2 0.000398653
Solanum lycopersicum SL4.0ch05 1 CH_sly_336 2 2 0.0000586941
Schrenkiella parvula ch4-2 1 CH_spa_296 2 2 0.00078734
Trifolium pratense Tp57577_TGAC_v2_LG3 1 CH_tpr_372 2 2 0.000454184
Arabidopsis lyrata scaffold_2 2 CH_aly_422 2 2 0.000660044
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 2 CH_arhy_530 3 60 0.000183757
Capsella rubella scaffold_6 2 CH_cru_421 2 2 0.000731154
Capsella rubella scaffold_2 2 CH_cru_422 2 2 0.000731154
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_276 2 2 0.0000448722
Helianthus annuus HanXRQChr17 2 CH_han_582 2 2 0.000231857
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_378 2 3 0.000154198
Pisum sativum chr6LG2 2 CH_psa_141 3 6 0.00000081617
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_732 2 2 0.000398653
Solanum lycopersicum SL4.0ch05 2 CH_sly_336 2 2 0.0000586941
Schrenkiella parvula ch4-2 2 CH_spa_296 2 2 0.00078734
Trifolium pratense Tp57577_TGAC_v2_LG3 2 CH_tpr_372 2 2 0.000454184

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001