Functional clusters
Information
- Type MapMan
- Description Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.siRNA-integrating factor (AGO)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 1 | CH_amhyb_144 | 2 | 2 | 0.0000841751 |
| Brassica napus | A10 | 1 | CH_bna_423 | 3 | 12 | 0.0000249699 |
| Brassica oleracea | C9 | 1 | CH_bol_220 | 3 | 17 | 0.0000217792 |
| Brassica rapa | A10 | 1 | CH_bra_183 | 3 | 13 | 0.000027651 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4077 | 1 | CH_cqu_248 | 3 | 6 | 0.00000377053 |
| Daucus carota | DCARv2_Chr6 | 1 | CH_dca_196 | 3 | 6 | 0.000014635 |
| Daucus carota | DCARv2_Chr8 | 1 | CH_dca_211 | 3 | 8 | 0.0000409616 |
| Durio zibethinus | NW_019168159.1 | 1 | CH_dzi_153 | 3 | 7 | 0.00000394598 |
| Lotus japonicus | chr5 | 1 | CH_lja_170 | 3 | 4 | 0.00000107369 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 1 | CH_lsa_176 | 3 | 3 | 0.0000000792629 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 1 | CH_lsa_531 | 2 | 2 | 0.00077101 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_397 | 2 | 4 | 0.000950537 |
| Prunus persica | Pp02 | 1 | CH_ppe_462 | 2 | 2 | 0.000447577 |
| Phaseolus vulgaris | Chr08 | 1 | CH_pvu_421 | 2 | 2 | 0.000440836 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_283 | 3 | 4 | 0.0000001907 |
| Rhododendron simsii | chr01 | 1 | CH_rsi_442 | 2 | 2 | 0.000193592 |
| Sechium edule | LG01 | 1 | CH_sed_338 | 2 | 2 | 0.000713419 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_522 | 2 | 2 | 0.000586941 |
| Solanum pennellii | Spenn-ch06 | 1 | CH_spe_508 | 2 | 2 | 0.000667186 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 2 | CH_amhyb_144 | 2 | 2 | 0.0000841751 |
| Brassica oleracea | C9 | 2 | CH_bol_220 | 3 | 17 | 0.0000217792 |
| Brassica rapa | A10 | 2 | CH_bra_183 | 3 | 13 | 0.000027651 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4077 | 2 | CH_cqu_248 | 3 | 6 | 0.00000377053 |
| Daucus carota | DCARv2_Chr6 | 2 | CH_dca_196 | 3 | 6 | 0.000014635 |
| Daucus carota | DCARv2_Chr8 | 2 | CH_dca_211 | 3 | 8 | 0.0000409616 |
| Durio zibethinus | NW_019168159.1 | 2 | CH_dzi_153 | 3 | 7 | 0.00000394598 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_839 | 2 | 2 | 0.000351165 |
| Lotus japonicus | chr5 | 2 | CH_lja_170 | 3 | 4 | 0.00000107369 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 2 | CH_lsa_176 | 3 | 3 | 0.0000000792629 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 2 | CH_lsa_531 | 2 | 2 | 0.00077101 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_397 | 2 | 4 | 0.000950537 |
| Prunus persica | Pp02 | 2 | CH_ppe_462 | 2 | 2 | 0.000447577 |
| Phaseolus vulgaris | Chr08 | 2 | CH_pvu_421 | 2 | 2 | 0.000440836 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_283 | 3 | 4 | 0.0000001907 |
| Rhododendron simsii | chr01 | 2 | CH_rsi_442 | 2 | 2 | 0.000193592 |
| Sechium edule | LG01 | 2 | CH_sed_338 | 2 | 2 | 0.000713419 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_522 | 2 | 2 | 0.000586941 |
| Solanum pennellii | Spenn-ch06 | 2 | CH_spe_508 | 2 | 2 | 0.000667186 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |