Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway.siRNA-binding factor (AGO2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group2 1 CH_ach_209 2 3 0.000488869
Arabidopsis lyrata scaffold_1 1 CH_aly_222 2 2 0.0000660044
Arabidopsis thaliana Chr1 1 CH_ath_299 2 4 0.00017189
Camellia sinensis var. sinensis Chr10 1 CH_camsi_47 5 6 0.00000000000000119383
Coffea canephora chr9 1 CH_ccan_261 2 11 0.000191648
Citrus clementina scaffold_2 1 CH_ccl_369 2 3 0.000246083
Capsella rubella scaffold_1 1 CH_cru_252 2 2 0.0000731154
Davidia involucrata GWHABJS00000002 1 CH_din_114 3 4 0.0000000600289
Durio zibethinus NW_019167982.1 1 CH_dzi_226 2 2 0.000139047
Erythranthe guttata scaffold_13 1 CH_egut_281 2 2 0.0000728147
Helianthus annuus HanXRQChr16 1 CH_han_555 2 4 0.000231848
Hydrangea macrophylla Hma1.2p1_0065F.1 1 CH_hma_407 2 3 0.000999685
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_327 2 2 0.0000514007
Malus domestica Chr10 1 CH_mdo_448 2 2 0.000113763
Prunus persica Pp04 1 CH_ppe_321 2 2 0.0000745962
Rhododendron simsii chr03 1 CH_rsi_158 3 3 0.0000000249861
Simmondsia chinensis GWHAASQ00000006 1 CH_sci_196 2 3 0.000255417
Solanum lycopersicum SL4.0ch02 1 CH_sly_125 3 3 0.00000000516764
Solanum pennellii Spenn-ch02 1 CH_spe_100 3 3 0.00000000296764
Solanum tuberosum ST4.03ch02 1 CH_stu_370 2 2 0.0000512453
Theobroma cacao Chromosome_6 1 CH_tca_157 3 6 0.000000160905
Tripterygium wilfordii NC_052240.1 1 CH_twi_210 2 2 0.000167252
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_99 3 3 0.0000000518115
Vitis vinifera chr10 1 CH_vvi_132 3 4 0.0000000347135
Actinidia chinensis Lachesis_group2 2 CH_ach_209 2 3 0.000488869
Arabidopsis lyrata scaffold_1 2 CH_aly_222 2 2 0.0000660044
Arabidopsis thaliana Chr1 2 CH_ath_299 2 4 0.00017189
Camellia sinensis var. sinensis Chr10 2 CH_camsi_47 5 6 0.00000000000000119383
Coffea canephora chr9 2 CH_ccan_261 2 11 0.000191648
Citrus clementina scaffold_2 2 CH_ccl_369 2 3 0.000246083
Capsella rubella scaffold_1 2 CH_cru_252 2 2 0.0000731154
Davidia involucrata GWHABJS00000002 2 CH_din_114 3 4 0.0000000600289
Durio zibethinus NW_019167982.1 2 CH_dzi_226 2 2 0.000139047
Eucalyptus grandis Chr04 2 CH_egr_470 3 5 0.000000205513
Erythranthe guttata scaffold_13 2 CH_egut_281 2 2 0.0000728147
Helianthus annuus HanXRQChr16 2 CH_han_555 2 4 0.000231848
Hydrangea macrophylla Hma1.2p1_0065F.1 2 CH_hma_407 2 3 0.000999685
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_327 2 2 0.0000514007
Malus domestica Chr10 2 CH_mdo_448 2 2 0.000113763
Prunus persica Pp04 2 CH_ppe_321 2 2 0.0000745962
Rhododendron simsii chr03 2 CH_rsi_158 3 3 0.0000000249861
Simmondsia chinensis GWHAASQ00000006 2 CH_sci_196 2 3 0.000255417
Solanum lycopersicum SL4.0ch02 2 CH_sly_125 3 3 0.00000000516764
Solanum pennellii Spenn-ch02 2 CH_spe_100 3 3 0.00000000296764
Solanum tuberosum ST4.03ch02 2 CH_stu_370 2 2 0.0000512453
Theobroma cacao Chromosome_6 2 CH_tca_157 3 6 0.000000160905
Tripterygium wilfordii NC_052240.1 2 CH_twi_210 2 2 0.000167252
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_99 3 3 0.0000000518115
Vitis vinifera chr10 2 CH_vvi_132 3 4 0.0000000347135

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001