Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p40380 Brassica napus
A09p14070 Brassica napus
A10p32900 Brassica napus
Aa31LG1G22080 Aethionema arabicum
Aa31LG2G1080 Aethionema arabicum
Aa31LG8G370 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.407 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1624 Anthoceros agrestis
Actinidia11230 Actinidia chinensis
Actinidia28344 Actinidia chinensis
Actinidia35397 Actinidia chinensis
Ah.06g181360 Amaranthus hybridus
Ah.09g237560 Amaranthus hybridus
Ah.15g092050 Amaranthus hybridus
AL2G11120 Arabidopsis lyrata
AL3G24910 Arabidopsis lyrata
AL6G12090 Arabidopsis lyrata
Aqoxy1G00281 Aquilegia oxysepala
Aqoxy1G04244 Aquilegia oxysepala
Aqoxy4G03150 Aquilegia oxysepala
Aqoxy4G03152 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0ANF44 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5UA89R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8L89DK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ARH0VQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DP4C8A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TU257H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YX38EM Arachis hypogaea
AT1G63990 Arabidopsis thaliana
AT3G13170 Arabidopsis thaliana
AT5G02820 Arabidopsis thaliana
ATR0594G128 Amborella trichopoda
ATR0661G491 Amborella trichopoda
ATR0827G179 Amborella trichopoda
Atru.BG.202.p Acer truncatum
Atru.chr2.3673 Acer truncatum
Atru.chr2.3674 Acer truncatum
Atru.chr8.2536 Acer truncatum
Atru.chr9.2114 Acer truncatum
AUR62011191 Chenopodium quinoa
AUR62013295 Chenopodium quinoa
AUR62017079 Chenopodium quinoa
AUR62024460 Chenopodium quinoa
AUR62026049 Chenopodium quinoa
AUR62036436 Chenopodium quinoa
AUR62040528 Chenopodium quinoa
AUR62042916 Chenopodium quinoa
BcaB05g21865 Brassica carinata
BcaB05g21866 Brassica carinata
BcaB07g31531 Brassica carinata
BcaC04g22660 Brassica carinata
BcaC06g32012 Brassica carinata
BolC1t05139H Brassica oleracea
BolC9t54593H Brassica oleracea
BolC9t60117H Brassica oleracea
BraA01t04073Z Brassica rapa
BraA09t37054Z Brassica rapa
BraA10t45327Z Brassica rapa
C01p51920 Brassica napus
C09p16960 Brassica napus
C09p73830 Brassica napus
CAN.G1110.16 Capsicum annuum
CAN.G205.33 Capsicum annuum
CAN.G2569.1 Capsicum annuum
CAN.G337.13 Capsicum annuum
CAN.G337.9 Capsicum annuum
CAN.G350.46 Capsicum annuum
CAN.G532.40 Capsicum annuum
CANSAT11G0117 Cannabis sativa
CANSAT21G0931 Cannabis sativa
CANSAT80G0404 Cannabis sativa
CARHR046990 Cardamine hirsuta
CARHR087750 Cardamine hirsuta
CARHR210510 Cardamine hirsuta
Carub.0002s0085 Capsella rubella
Carub.0003s1251 Capsella rubella
Carub.0006s0162 Capsella rubella
Ca_02309_v3 Cicer arietinum L.
Ca_06383_v3 Cicer arietinum L.
Ca_24536_v3 Cicer arietinum L.
Ca_29964_v3 Cicer arietinum L.
CBR_g19885 Chara braunii
CBR_g20285 Chara braunii
Cc01_g19790 Coffea canephora
Cc05_g14850 Coffea canephora
Cc06_g03430 Coffea canephora
Cc08_g15260 Coffea canephora
CDE04G2715 Ceratophyllum demersum
CDE11G0384 Ceratophyllum demersum
Cfa012245 Carpinus fangiana
Cfa017488 Carpinus fangiana
Cfa020207 Carpinus fangiana
Cfa021986 Carpinus fangiana
Cfa023723 Carpinus fangiana
Ciclev10010322m.g Citrus clementina
Ciclev10011761m.g Citrus clementina
Ciclev10024616m.g Citrus clementina
CiPaw.09G182000 Carya illinoinensis
CiPaw.11G104800 Carya illinoinensis
CiPaw.11G202700 Carya illinoinensis
ClCG01G002330 Citrullus lanatus
ClCG04G008770 Citrullus lanatus
ClCG09G021210 Citrullus lanatus
COL.COLO4_07102 Corchorus olitorius
COL.COLO4_08361 Corchorus olitorius
COL.COLO4_09814 Corchorus olitorius
COL.COLO4_09815 Corchorus olitorius
COL.COLO4_10282 Corchorus olitorius
COL.COLO4_22275 Corchorus olitorius
COL.COLO4_22276 Corchorus olitorius
COL.COLO4_27103 Corchorus olitorius
Cpa.g.sc12.159 Carica papaya
Cpa.g.sc12.160 Carica papaya
Cpa.g.sc2704.1 Carica papaya
Cpa.g.sc45.25 Carica papaya
Cre02.g084800 Chlamydomonas reinhardtii
Cre14.g619825 Chlamydomonas reinhardtii
CsaV3_4G024390 Cucumis sativus L.
CsaV3_5G002400 Cucumis sativus L.
CsaV3_7G017260 Cucumis sativus L.
CsaV3_7G017270 Cucumis sativus L.
CsaV3_7G017280 Cucumis sativus L.
CsaV3_7G018280 Cucumis sativus L.
CsaV3_UNG200520 Cucumis sativus L.
CsaV3_UNG214460 Cucumis sativus L.
CSS0006064 Camellia sinensis var. sinensis
CSS0026629 Camellia sinensis var. sinensis
CSS0026634 Camellia sinensis var. sinensis
CSS0027160 Camellia sinensis var. sinensis
DCAR_008355 Daucus carota
DCAR_009271 Daucus carota
Dinv35695 Davidia involucrata
Dinv37596 Davidia involucrata
Dinv40848 Davidia involucrata
Duzib084G0419 Durio zibethinus
Duzib128G1651 Durio zibethinus
Duzib170G0318 Durio zibethinus
Duzib205G2063 Durio zibethinus
ECA233G5957 Erigeron canadensis
ECA233G6039 Erigeron canadensis
EL10Ac3g07100 Beta vulgaris
EL10Ac4g07597 Beta vulgaris
EL10Ac7g17326 Beta vulgaris
Eucgr.E00781 Eucalyptus grandis
Eucgr.F03701 Eucalyptus grandis
Eucgr.K03202 Eucalyptus grandis
Eucgr.L03317 Eucalyptus grandis
FAN03G0775 Fragaria x ananassa
FAN04G1349 Fragaria x ananassa
FAN04G2019 Fragaria x ananassa
FAN05G2904 Fragaria x ananassa
FAN07G2329 Fragaria x ananassa
FAN08G0489 Fragaria x ananassa
FAN11G2921 Fragaria x ananassa
FAN13G1665 Fragaria x ananassa
FAN16G1179 Fragaria x ananassa
FAN18G0903 Fragaria x ananassa
FAN19G2533 Fragaria x ananassa
FAN19G2582 Fragaria x ananassa
FAN21G2124 Fragaria x ananassa
FAN22G0699 Fragaria x ananassa
FAN23G1932 Fragaria x ananassa
FAN24G1719 Fragaria x ananassa
FAN25G1628 Fragaria x ananassa
FAN26G1188 Fragaria x ananassa
FAN26G1855 Fragaria x ananassa
FvH4_1g02062 Fragaria vesca
FvH4_1g22710 Fragaria vesca
FvH4_2g03881 Fragaria vesca
FvH4_2g16251 Fragaria vesca
FvH4_2g33020 Fragaria vesca
FvH4_3g06051 Fragaria vesca
FvH4_3g06060 Fragaria vesca
FvH4_3g29420 Fragaria vesca
FvH4_3g29421 Fragaria vesca
FvH4_3g43731 Fragaria vesca
FvH4_3g43753 Fragaria vesca
FvH4_4g12771 Fragaria vesca
FvH4_5g03200 Fragaria vesca
FvH4_6g05151 Fragaria vesca
FvH4_7g23893 Fragaria vesca
Glyma.02G299600 Glycine max
Glyma.10G048300 Glycine max
Glyma.11G021300 Glycine max
Glyma.13G136100 Glycine max
Gohir.A01G090600 Gossypium hirsutum
Gohir.A04G077200 Gossypium hirsutum
Gohir.A08G114200 Gossypium hirsutum
Gohir.D01G075900 Gossypium hirsutum
Gohir.D04G116300 Gossypium hirsutum
Gohir.D08G134500 Gossypium hirsutum
Gorai.002G099100 Gossypium raimondii
Gorai.004G137600 Gossypium raimondii
Gorai.009G420900 Gossypium raimondii
GSVIVG01014659001 Vitis vinifera
GSVIVG01019418001 Vitis vinifera
GSVIVG01025540001 Vitis vinifera
HanXRQChr02g0049711 Helianthus annuus
HanXRQChr02g0051861 Helianthus annuus
HanXRQChr05g0161851 Helianthus annuus
HanXRQChr05g0161861 Helianthus annuus
HanXRQChr05g0161871 Helianthus annuus
HanXRQChr13g0423891 Helianthus annuus
Haze_08757 Corylus avellana
Haze_09810 Corylus avellana
Haze_20671 Corylus avellana
Haze_26588 Corylus avellana
Hma1.2p1_0036F.1_g022500 Hydrangea macrophylla
Hma1.2p1_0216F.1_g091080 Hydrangea macrophylla
Hma1.2p1_0350F.1_g132690 Hydrangea macrophylla
Hma1.2p1_0889F.1_g232825 Hydrangea macrophylla
HPP92_003602 Vanilla planifolia
HPP92_006515 Vanilla planifolia
HPP92_018592 Vanilla planifolia
HPP92_018596 Vanilla planifolia
HPP92_025463 Vanilla planifolia
HPP92_025464 Vanilla planifolia
Hund01905 Selenicereus undatus
Hund15092 Selenicereus undatus
Lalb_Chr04g0247891 Lupinus albus
Lalb_Chr04g0247901 Lupinus albus
Lalb_Chr16g0377031 Lupinus albus
Lalb_Chr21g0314581 Lupinus albus
Lj1g0016902 Lotus japonicus
Lj3A977T51 Lonicera japonica
Lj5g0003554 Lotus japonicus
Lj5g0024683 Lotus japonicus
Lj8A178T76 Lonicera japonica
Lj8A216G70 Lonicera japonica
LjContig00081g0000365 Lotus japonicus
LjContig00312_ERROPOS870357g0025239 Lotus japonicus
Lsat_1_v5_gn_4_63960 Lactuca sativa
Lsat_1_v5_gn_6_29580 Lactuca sativa
Lsat_1_v5_gn_6_4261 Lactuca sativa
Manes.09G070800 Manihot esculenta
Manes.10G032400 Manihot esculenta
Manes.15G061000 Manihot esculenta
Mapoly0030s0084 Marchantia polymorpha
Mapoly0114s0011 Marchantia polymorpha
MBI04_g19287_MAGBIO Magnolia biondii
MBI04_g30489_MAGBIO Magnolia biondii
MBI14_g24890_MAGBIO Magnolia biondii
MBI14_g28308_MAGBIO Magnolia biondii
MBI16_g22433_MAGBIO Magnolia biondii
MBI16_g22434_MAGBIO Magnolia biondii
MCO01G458 Micromonas commoda
MCO05G079 Micromonas commoda
MD03G1184400 Malus domestica
MD03G1184500 Malus domestica
MD03G1184600 Malus domestica
MD03G1184700 Malus domestica
MD04G1113900 Malus domestica
MD08G1212100 Malus domestica
MD11G1201200 Malus domestica
MD14G1112000 Malus domestica
MD15G1424500 Malus domestica
Medtr1g067040 Medicago truncatula
Medtr5g009990 Medicago truncatula
Medtr5g084590 Medicago truncatula
Medtr5g095040 Medicago truncatula
Medtr5g095090 Medicago truncatula
Medtr7g011430 Medicago truncatula
Medtr7g011440 Medicago truncatula
MELO3C003071.2 Cucumis melo
MELO3C005714.2 Cucumis melo
MELO3C024924.2 Cucumis melo
Migut.A00719 Erythranthe guttata
Migut.L01653 Erythranthe guttata
Migut.M01660 Erythranthe guttata
Nitab4.5_0000461g0220 Nicotiana tabacum
Nitab4.5_0000848g0030 Nicotiana tabacum
Nitab4.5_0000848g0040 Nicotiana tabacum
Nitab4.5_0000848g0150 Nicotiana tabacum
Nitab4.5_0003015g0120 Nicotiana tabacum
Nitab4.5_0003894g0060 Nicotiana tabacum
Nitab4.5_0006316g0010 Nicotiana tabacum
Nitab4.5_0006886g0020 Nicotiana tabacum
Nitab4.5_0006886g0030 Nicotiana tabacum
Nitab4.5_0007906g0050 Nicotiana tabacum
Nn1g01675 Nelumbo nucifera
Nn1g01676 Nelumbo nucifera
Nn1g03205 Nelumbo nucifera
Nn2g10614 Nelumbo nucifera
Oeu005966.1 Olea europaea
Oeu034821.1 Olea europaea
Oeu049387.1 Olea europaea
Oeu059490.1 Olea europaea
Os03g0284800 Oryza sativa ssp. japonica
Os03g0752200 Oryza sativa ssp. japonica
Os08g0156900 Oryza sativa ssp. japonica
Os12g0622500 Oryza sativa ssp. japonica
Peaxi162Scf00074g01731 Petunia axillaris
Peaxi162Scf00612g00027 Petunia axillaris
Peaxi162Scf00612g00028 Petunia axillaris
Peaxi162Scf00612g00138 Petunia axillaris
Peaxi162Scf00612g00139 Petunia axillaris
Peaxi162Scf00668g00431 Petunia axillaris
Peaxi162Scf01517g00015 Petunia axillaris
PGR004G0986 Punica granatum
PGR031G1458 Punica granatum
PGR042G0367 Punica granatum
PGSC0003DMG400012184 Solanum tuberosum
PGSC0003DMG400027900 Solanum tuberosum
PGSC0003DMG401022175 Solanum tuberosum
PGSC0003DMG402022175 Solanum tuberosum
Phvul.002G160000 Phaseolus vulgaris
Phvul.007G162700 Phaseolus vulgaris
Phvul.008G278300 Phaseolus vulgaris
Potri.001G099100 Populus trichocarpa
Potri.001G366700 Populus trichocarpa
Potri.006G132600 Populus trichocarpa
Pp3c15_16330 Physcomitrium patens
Pp3c6_18230 Physcomitrium patens
Pp3c8_12030 Physcomitrium patens
PRCOL_00000411 Prasinoderma coloniale
PRCOL_00005653 Prasinoderma coloniale
Prupe.1G138600 Prunus persica
Prupe.4G125600 Prunus persica
Prupe.4G241800 Prunus persica
Prupe.5G052600 Prunus persica
Prupe.5G106600 Prunus persica
Prupe.6G243200 Prunus persica
Psat0ss6317g0080 Pisum sativum
Psat2g008560 Pisum sativum
Psat2g183760 Pisum sativum
Psat4g050240 Pisum sativum
PSO210G1564 Papaver somniferum
PSO210G4199 Papaver somniferum
PSO266G0060 Papaver somniferum
PSO339G6008 Papaver somniferum
PSO384G1578 Papaver somniferum
PSO478G0962 Papaver somniferum
QL07p045562 Quercus lobata
QL08p004639 Quercus lobata
QL08p004686 Quercus lobata
QL12p031785 Quercus lobata
RcHm_v2.0_Chr1g0363151 Rosa chinensis
RcHm_v2.0_Chr1g0379621 Rosa chinensis
RcHm_v2.0_Chr2g0086091 Rosa chinensis
RcHm_v2.0_Chr2g0089291 Rosa chinensis
RcHm_v2.0_Chr2g0089851 Rosa chinensis
RcHm_v2.0_Chr2g0103111 Rosa chinensis
RcHm_v2.0_Chr2g0116961 Rosa chinensis
RcHm_v2.0_Chr2g0166421 Rosa chinensis
RcHm_v2.0_Chr3g0447681 Rosa chinensis
RcHm_v2.0_Chr3g0453711 Rosa chinensis
RcHm_v2.0_Chr5g0010071 Rosa chinensis
RcHm_v2.0_Chr5g0053841 Rosa chinensis
RcHm_v2.0_Chr5g0062071 Rosa chinensis
RcHm_v2.0_Chr5g0083311 Rosa chinensis
RcHm_v2.0_Chr6g0278391 Rosa chinensis
RcHm_v2.0_Chr7g0196581 Rosa chinensis
Rhsim02G0235800 Rhododendron simsii
Rhsim03G0164900 Rhododendron simsii
Rhsim04G0013200 Rhododendron simsii
Rhsim05G0035900 Rhododendron simsii
Rhsim06G0227800 Rhododendron simsii
RhsimUnG0086100 Rhododendron simsii
RhsimUnG0086200 Rhododendron simsii
RhsimUnG0119500 Rhododendron simsii
Sabra01G0074300 Salix brachista
Sabra06G0104100 Salix brachista
Sabra16G0240000 Salix brachista
SalBow4G2907 Salvia bowleyana
SalBow8G1206 Salvia bowleyana
Sc01g0009860 Simmondsia chinensis
Sc03g0011170 Simmondsia chinensis
Sc07g0006220 Simmondsia chinensis
Sed0007632 Sechium edule
Sed0010799 Sechium edule
Sed0021994 Sechium edule
SEGI_03081 Sequoiadendron giganteum
SEGI_09198 Sequoiadendron giganteum
SEGI_17456 Sequoiadendron giganteum
SEGI_24669 Sequoiadendron giganteum
SGA_v2.0_scaffold146G36265 Striga asiatica
SGA_v2.0_scaffold329G48826 Striga asiatica
SGA_v2.0_scaffold94G28657 Striga asiatica
SHI26533 Sapria himalayana
SMO239G0116 Selaginella moellendorffii
SMO266G0075 Selaginella moellendorffii
SMO271G0057 Selaginella moellendorffii
SMO295G0001 Selaginella moellendorffii
SMO307G0021 Selaginella moellendorffii
SMO307G0075 Selaginella moellendorffii
Solyc07g065430.2 Solanum lycopersicum
Solyc07g065440.4 Solanum lycopersicum
Solyc08g081590.3 Solanum lycopersicum
Solyc09g007210.4 Solanum lycopersicum
Sopen07g033640 Solanum pennellii
Sopen07g033650 Solanum pennellii
Sopen08g029900 Solanum pennellii
Sopen09g002080 Solanum pennellii
Sp2g00700 Schrenkiella parvula
Sp3g11340 Schrenkiella parvula
Sp6g39760 Schrenkiella parvula
TAR369G1107 Trochodendron aralioides
TAR375G0317 Trochodendron aralioides
THA.LOC104810290 Tarenaya hassleriana
THA.LOC104816314 Tarenaya hassleriana
THA.LOC104823599 Tarenaya hassleriana
Thecc.03G286600 Theobroma cacao
Thecc.05G052100 Theobroma cacao
Thecc.07G015600 Theobroma cacao
Thhalv10015802m.g Eutrema salsugineum
Thhalv10022332m.g Eutrema salsugineum
Thhalv10023831m.g Eutrema salsugineum
TPR.G14176 Trifolium pratense
TPR.G22713 Trifolium pratense
TPR.G24521 Trifolium pratense
TPR.G31630 Trifolium pratense
TPR.G35661 Trifolium pratense
TPR.G40031 Trifolium pratense
TPR.G40364 Trifolium pratense
TPR.G628 Trifolium pratense
TPR.G6687 Trifolium pratense
TWI18G0556 Tripterygium wilfordii
TWI39G0056 Tripterygium wilfordii
TWI60G1516 Tripterygium wilfordii
unitig_37.g12235 Utricularia gibba
unitig_37.g12236 Utricularia gibba
unitig_61.g26139 Utricularia gibba
unitig_747.g21640 Utricularia gibba
vmacro09653 Vaccinium macrocarpon
vmacro11411 Vaccinium macrocarpon
vmacro20070 Vaccinium macrocarpon
vmacro22710 Vaccinium macrocarpon
VMungo0464G1099 Vigna mungo
VMungo0647G0207 Vigna mungo
VMungo1215G0710 Vigna mungo
Zm00001eb013040 Zea mays
Zm00001eb172550 Zea mays
Zm00001eb214790 Zea mays

User provided reference genes

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