Gene: COL.COLO4_27103

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_27103
  • Transcript Identifier COL.rna25830
  • Gene Type Coding gene
  • Location AWUE01019428.1 : 96706-97959 : negative

Gene Family Information

  • ID HOM05D001458
  • #Genes/#Species 433/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna25830
  • GenBank OMO73471.1
  • id gene27075
  • gene_name COLO4_27103
  • uniprot A0A1R3HTH1

Descriptions

  • Description Spo11/DNA topoisomerase VI, subunit A
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair Os12g0622500
GO:0007131
ISO
PLAZA Integrative Orthologyreciprocal meiotic recombination Os12g0622500
GO:0009957
ISO
PLAZA Integrative Orthologyepidermal cell fate specification AT5G02820
GO:0006259
IEA
GOA DatabaseDNA metabolic process
GO:0006259
IEA
InterProDNA metabolic process
GO:0042138
IEA
GOA Databasemeiotic DNA double-strand break formation
GO:0042138
IEA
InterPromeiotic DNA double-strand break formation
GO:0006265
IEA
GOA DatabaseDNA topological change
GO:0006265
IEA
InterProDNA topological change

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0030957
ISO
PLAZA Integrative OrthologyTat protein binding Os12g0622500
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity Os12g0622500
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G02820
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT5G02820
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0003918
IEA
GOA DatabaseDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0003918
IEA
InterProDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0003916
IEA
GOA DatabaseDNA topoisomerase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0000287
IEA
GOA Databasemagnesium ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
GOA Databasechromosome
GO:0005694
IEA
InterProchromosome
GO:0005634
IEA
GOA Databasenucleus
GO:0009330
IEA
GOA DatabaseDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004085 DNA topoisomerase VI, subunit A
IPR002815 Spo11/DNA topoisomerase VI subunit A
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR036078 Spo11/DNA topoisomerase VI subunit A superfamily
IPR034136 Topoisomerase 6 subunit A/Spo11, TOPRIM domain
IPR013049 Spo11/DNA topoisomerase VI, subunit A, N-terminal
Mapman id Description
13.2.6.1.1 Cell cycle organisation.DNA replication.endoreduplication.somatic DNA topoisomerase VI complex.subunit TOP6A