Gene: Solyc07g065430.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc07g065430.2
- Transcript Identifier Solyc07g065430.2.1
- Gene Type Coding gene
- Location SL4.0ch07 : 67015770-67020618 : negative
Gene Family Information
- ID HOM05D001458
- #Genes/#Species 433/99
- Phylogenetic origin
- ID ORTHO05D007170
- #Genes/#Species 133/88
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc07g065430.2.1
- gene_id Solyc07g065430
Descriptions
- Description DNA topoisomerase 6 subunit A (AHRD V3.3 *-* E1ZHQ0_CHLVA)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042138 | IEA | InterPro | meiotic DNA double-strand break formation | |
| GO:0051026 | ISO | PLAZA Integrative Orthology | chiasma assembly | AT3G13170 |
| GO:0007131 | ISO | PLAZA Integrative Orthology | reciprocal meiotic recombination | AT3G13170 |
| GO:0000706 | ISO | PLAZA Integrative Orthology | meiotic DNA double-strand break processing | AT3G13170 |
| GO:0000724 | ISO | PLAZA Integrative Orthology | double-strand break repair via homologous recombination | Os03g0752200 |
| GO:0006259 | ISO | PLAZA Homology (enrichment) | DNA metabolic process | HOM05D001458 |
| GO:0007129 | ISO | PLAZA Integrative Orthology | homologous chromosome pairing at meiosis | AT3G13170 |
| GO:0034090 | ISO | PLAZA Integrative Orthology | maintenance of meiotic sister chromatid cohesion | AT3G13170 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003918 | IEA | InterPro | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0005524 | ISO | PLAZA Homology (enrichment) | ATP binding | HOM05D001458 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G13170 |
| GO:0003824 | ISO | PLAZA Homology (enrichment) | catalytic activity | HOM05D001458 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005694 | IEA | InterPro | chromosome | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G13170 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR034136 | Topoisomerase 6 subunit A/Spo11, TOPRIM domain |
| IPR013048 | Meiotic recombination, Spo11 |
| IPR036163 | Heavy metal-associated domain superfamily |
| IPR002815 | Spo11/DNA topoisomerase VI subunit A |
| IPR036078 | Spo11/DNA topoisomerase VI subunit A superfamily |
| IPR006121 | Heavy metal-associated domain, HMA |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |