Gene: Os12g0622500

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os12g0622500
  • Transcript Identifier Os12t0622500-01
  • Gene Type Coding gene
  • Location chr12 : 26579018-26580589 : positive

Gene Family Information

  • ID HOM05D001458
  • #Genes/#Species 433/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os12t0622500-01
  • MSU-ID LOC_Os12g42760.1
  • symbol OsSpo11-4
  • symbol OsSPO11-4
  • uniprot Q2QM00

Descriptions

  • Description Homologue of the archaeal topoisomerase VIA, Mediation of double-strand DNA cleavage, Required for meiosis
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007131
IMP
IBA
GOA Databasereciprocal meiotic recombination
GO:0006265
IEA
GOA DatabaseDNA topological change
GO:0006265
IEA
InterProDNA topological change
GO:0006259
IEA
GOA DatabaseDNA metabolic process
GO:0006259
IEA
InterProDNA metabolic process
GO:0042138
IBA
IEA
GOA Databasemeiotic DNA double-strand break formation
GO:0042138
IEA
InterPromeiotic DNA double-strand break formation
GO:0000706
IBA
GOA Databasemeiotic DNA double-strand break processing
GO:0006302
IMP
GOA Databasedouble-strand break repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0003918
IEA
GOA DatabaseDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0003918
IEA
InterProDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0003677
IBA
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0030957
IPI
GOA DatabaseTat protein binding
GO:0042803
IPI
GOA Databaseprotein homodimerization activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
GOA Databasechromosome
GO:0005694
IEA
InterProchromosome
GO:0000228
IBA
GOA Databasenuclear chromosome
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR002815 Spo11/DNA topoisomerase VI subunit A
IPR013049 Spo11/DNA topoisomerase VI, subunit A, N-terminal
IPR036078 Spo11/DNA topoisomerase VI subunit A superfamily
IPR004085 DNA topoisomerase VI, subunit A
IPR034136 Topoisomerase 6 subunit A/Spo11, TOPRIM domain
Mapman id Description
35.1 not assigned.annotated