Gene: COL.COLO4_07102

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_07102
  • Transcript Identifier COL.rna5914
  • Gene Type Coding gene
  • Location AWUE01013080.1 : 15326-18062 : positive

Gene Family Information

  • ID HOM05D001458
  • #Genes/#Species 433/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna5914
  • GenBank OMP07728.1
  • id gene7074
  • gene_name COLO4_07102
  • uniprot A0A1R3KL47

Descriptions

  • Description Spo11/DNA topoisomerase VI, subunit A
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034090
ISO
PLAZA Integrative Orthologymaintenance of meiotic sister chromatid cohesion AT3G13170
GO:0007129
ISO
PLAZA Integrative Orthologyhomologous chromosome pairing at meiosis AT3G13170
GO:0000724
ISO
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination Os03g0752200
GO:0000706
ISO
PLAZA Integrative Orthologymeiotic DNA double-strand break processing AT3G13170
GO:0007131
ISO
PLAZA Integrative Orthologyreciprocal meiotic recombination AT3G13170
GO:0051026
ISO
PLAZA Integrative Orthologychiasma assembly AT3G13170
GO:0006259
IEA
GOA DatabaseDNA metabolic process
GO:0006259
IEA
InterProDNA metabolic process
GO:0042138
IEA
GOA Databasemeiotic DNA double-strand break formation
GO:0042138
IEA
InterPromeiotic DNA double-strand break formation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G13170
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003918
IEA
GOA DatabaseDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0003918
IEA
InterProDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016853
IEA
GOA Databaseisomerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
GOA Databasechromosome
GO:0005694
IEA
InterProchromosome
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G13170

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002815 Spo11/DNA topoisomerase VI subunit A
IPR013049 Spo11/DNA topoisomerase VI, subunit A, N-terminal
IPR013048 Meiotic recombination, Spo11
IPR036078 Spo11/DNA topoisomerase VI subunit A superfamily
IPR034136 Topoisomerase 6 subunit A/Spo11, TOPRIM domain
Mapman id Description
13.3.5.2.1.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.component a/SPO11