Gene: CBR_g20285
General Information
Structural Information
- Species Chara braunii
- Gene Identifier CBR_g20285
- Transcript Identifier GBG75658
- Gene Type Coding gene
- Location BFEA01000228 : 1923848-1969490 : negative
Gene Family Information
- ID HOM05D001458
- #Genes/#Species 433/99
- Phylogenetic origin
- ID ORTHO05D006787
- #Genes/#Species 138/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid GBG75658
- uniprot A0A388L061
Descriptions
- Description hypothetical protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006265 | IEA | GOA Database | DNA topological change | |
| GO:0006265 | IEA | InterPro | DNA topological change | |
| GO:0009957 | ISO | PLAZA Integrative Orthology | epidermal cell fate specification | AT5G02820 |
| GO:0051026 | ISO | PLAZA Integrative Orthology | chiasma assembly | AT3G13170 |
| GO:0006302 | ISO | PLAZA Integrative Orthology | double-strand break repair | Os12g0622500 |
| GO:0034090 | ISO | PLAZA Integrative Orthology | maintenance of meiotic sister chromatid cohesion | AT3G13170 |
| GO:0007129 | ISO | PLAZA Integrative Orthology | homologous chromosome pairing at meiosis | AT3G13170 |
| GO:0000724 | ISO | PLAZA Integrative Orthology | double-strand break repair via homologous recombination | Os03g0752200 |
| GO:0000706 | ISO | PLAZA Integrative Orthology | meiotic DNA double-strand break processing | AT3G13170 |
| GO:0007131 | ISO | PLAZA Integrative Orthology | reciprocal meiotic recombination | AT3G13170 |
| GO:0006259 | IEA | GOA Database | DNA metabolic process | |
| GO:0006259 | IEA | InterPro | DNA metabolic process | |
| GO:0042138 | IEA | GOA Database | meiotic DNA double-strand break formation | |
| GO:0042138 | IEA | InterPro | meiotic DNA double-strand break formation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030957 | ISO | PLAZA Integrative Orthology | Tat protein binding | Os12g0622500 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G02820 |
| GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | Os12g0622500 |
| GO:0042802 | ISO | PLAZA Integrative Orthology | identical protein binding | AT5G02820 |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0003918 | IEA | GOA Database | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | |
| GO:0003918 | IEA | InterPro | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G02820 |
| GO:0005694 | IEA | GOA Database | chromosome | |
| GO:0005694 | IEA | InterPro | chromosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036078 | Spo11/DNA topoisomerase VI subunit A superfamily |
| IPR013049 | Spo11/DNA topoisomerase VI, subunit A, N-terminal |
| IPR002815 | Spo11/DNA topoisomerase VI subunit A |
| IPR034136 | Topoisomerase 6 subunit A/Spo11, TOPRIM domain |
| IPR004085 | DNA topoisomerase VI, subunit A |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 13.2.6.1.1 | Cell cycle organisation.DNA replication.endoreduplication.somatic DNA topoisomerase VI complex.subunit TOP6A |