Gene: FAN11G2921
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN11G2921
- Transcript Identifier FAN11G2921.1
- Gene Type Coding gene
- Location Fvb3-4 : 11229313-11234375 : negative
Gene Family Information
- ID HOM05D001458
- #Genes/#Species 433/99
- Phylogenetic origin
- ID ORTHO05D007170
- #Genes/#Species 133/88
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id maker-Fvb3-4-snap-gene-112.69.v1.0.a1
- pacid 50537971
Descriptions
- Description PF00403//PF04406 - Heavy-metal-associated domain (HMA) // Type IIB DNA topoisomerase (TP6A_N)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006265 | IEA | InterPro | DNA topological change | |
| GO:0034090 | ISO | PLAZA Integrative Orthology | maintenance of meiotic sister chromatid cohesion | AT3G13170 |
| GO:0007129 | ISO | PLAZA Integrative Orthology | homologous chromosome pairing at meiosis | AT3G13170 |
| GO:0000724 | ISO | PLAZA Integrative Orthology | double-strand break repair via homologous recombination | Os03g0752200 |
| GO:0000706 | ISO | PLAZA Integrative Orthology | meiotic DNA double-strand break processing | AT3G13170 |
| GO:0007131 | ISO | PLAZA Integrative Orthology | reciprocal meiotic recombination | AT3G13170 |
| GO:0051026 | ISO | PLAZA Integrative Orthology | chiasma assembly | AT3G13170 |
| GO:0006259 | IEA | InterPro | DNA metabolic process | |
| GO:0042138 | IEA | InterPro | meiotic DNA double-strand break formation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G13170 |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0003918 | IEA | InterPro | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G13170 |
| GO:0005694 | IEA | InterPro | chromosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002815 | Spo11/DNA topoisomerase VI subunit A |
| IPR036163 | Heavy metal-associated domain superfamily |
| IPR006121 | Heavy metal-associated domain, HMA |
| IPR013049 | Spo11/DNA topoisomerase VI, subunit A, N-terminal |
| IPR034136 | Topoisomerase 6 subunit A/Spo11, TOPRIM domain |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR004085 | DNA topoisomerase VI, subunit A |
| IPR036078 | Spo11/DNA topoisomerase VI subunit A superfamily |
| Mapman id | Description |
|---|---|
| 13.3.5.2.1.1 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.component a/SPO11 |