Gene: Lj5g0003554

General Information

Structural Information

  • Species Lotus japonicus
  • Gene Identifier Lj5g0003554
  • Transcript Identifier Lj5g0003554.1
  • Gene Type Coding gene
  • Location chr5 : 54010186-54010938 : negative

Gene Family Information

  • ID HOM05D001458
  • #Genes/#Species 433/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lj5g0003554.Lj1.0v1
  • pacid 44924224

Descriptions

  • Description PTHR10848:SF0 - MEIOTIC RECOMBINATION PROTEIN SPO11
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042138
IEA
InterPromeiotic DNA double-strand break formation
GO:0009957
ISO
PLAZA Integrative Orthologyepidermal cell fate specification AT5G02820
GO:0007131
ISO
PLAZA Integrative Orthologyreciprocal meiotic recombination Os12g0622500
GO:0006259
ISO
PLAZA Homology (enrichment)DNA metabolic process HOM05D001458
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair Os12g0622500

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003918
IEA
InterProDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0005524
ISO
PLAZA Homology (enrichment)ATP binding HOM05D001458
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT5G02820
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G02820
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity Os12g0622500
GO:0030957
ISO
PLAZA Integrative OrthologyTat protein binding Os12g0622500
GO:0003824
ISO
PLAZA Homology (enrichment)catalytic activity HOM05D001458

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
InterProchromosome
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G02820

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034136 Topoisomerase 6 subunit A/Spo11, TOPRIM domain
IPR036078 Spo11/DNA topoisomerase VI subunit A superfamily
IPR002815 Spo11/DNA topoisomerase VI subunit A
Mapman id Description
35.1 not assigned.annotated