Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1692 Trochodendron aralioides HOM05D002341 ORTHO05D003165 2.3e-45 185.3 99 100.0
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
CSS0044190 Camellia sinensis var. sinensis HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Cpa.g.sc67.49 Carica papaya HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
CDE02G0999 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Dinv30609 Davidia involucrata HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
ECA247G2936 Erigeron canadensis HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Gohir.A05G122851 Gossypium hirsutum HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Gohir.A10G073101 Gossypium hirsutum HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Gohir.D05G123700 Gossypium hirsutum HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Gohir.D10G077825 Gossypium hirsutum HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
SHI11229 Sapria himalayana HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
SEGI_03160 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
SEGI_15815 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
TAR383G0801 Trochodendron aralioides HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
TAR383G0916 Trochodendron aralioides HOM05D000467 ORTHO05D000379 2.5e-31 138.7 82 91.5
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
HPP92_003044 Vanilla planifolia HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 2.5e-31 138.7 82 91.5
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 4.3e-31 137.9 81 91.4
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 5.6e-31 137.5 82 90.2
Nitab4.5_0001200g0150 Nicotiana tabacum HOM05D002341 ORTHO05D003165 7.3e-31 137.1 81 91.4
Nitab4.5_0007065g0030 Nicotiana tabacum HOM05D002341 ORTHO05D003165 7.3e-31 137.1 81 91.4
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 1.2e-30 136.3 82 89.0
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 1.2e-30 136.3 82 90.2
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.2e-30 136.3 82 90.2
FAN05G3465 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.2e-30 136.3 82 90.2
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.2e-30 136.3 82 90.2
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.2e-30 136.3 82 90.2
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 1.2e-30 136.3 82 89.0
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 1.2e-30 136.3 82 89.0
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 1.2e-30 136.3 82 90.2
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 1.6e-30 136.0 82 89.0
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 1.6e-30 136.0 81 90.1
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 2.1e-30 135.6 82 89.0
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 2.1e-30 135.6 82 89.0
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 2.8e-30 135.2 82 87.8
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 2.8e-30 135.2 82 89.0
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 2.8e-30 135.2 82 87.8
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 2.8e-30 135.2 82 87.8
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 3.6e-30 134.8 82 87.8
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 3.6e-30 134.8 82 89.0
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 3.6e-30 134.8 82 89.0
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 3.6e-30 134.8 82 89.0
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 8.0e-30 133.7 81 88.9
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 8.0e-30 133.7 81 88.9
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 8.0e-30 133.7 81 88.9
C04p60600 Brassica napus HOM05D002341 ORTHO05D003165 8.0e-30 133.7 82 87.8
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 8.0e-30 133.7 81 88.9
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 8.0e-30 133.7 81 88.9
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 1.0e-29 133.3 82 87.8
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 1.0e-29 133.3 82 87.8
C04p60540 Brassica napus HOM05D002341 ORTHO05D003165 1.0e-29 133.3 82 87.8
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 1.0e-29 133.3 82 87.8
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 1.0e-29 133.3 82 87.8
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 1.0e-29 133.3 82 87.8
Nn8g40737 Nelumbo nucifera HOM05D002341 ORTHO05D003165 1.0e-29 133.3 82 87.8
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 1.4e-29 132.9 82 86.6
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 1.4e-29 132.9 82 86.6
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 1.4e-29 132.9 82 86.6
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 1.4e-29 132.9 82 86.6
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 1.4e-29 132.9 82 86.6
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 1.4e-29 132.9 82 86.6
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 1.4e-29 132.9 82 86.6
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 1.4e-29 132.9 82 86.6
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 1.4e-29 132.9 82 86.6
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 1.8e-29 132.5 81 88.9
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 1.8e-29 132.5 82 86.6
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 1.8e-29 132.5 82 86.6
unitig_747.g21298 Utricularia gibba HOM05D002341 ORTHO05D003165 1.8e-29 132.5 82 87.8
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 2.3e-29 132.1 81 87.7
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 2.3e-29 132.1 91 78.0
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 3.0e-29 131.7 82 85.4
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 3.0e-29 131.7 82 86.6
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 5.2e-29 131.0 82 85.4
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 5.2e-29 131.0 82 85.4
TPR.G7701 Trifolium pratense HOM05D002341 ORTHO05D003165 5.2e-29 131.0 81 86.4
ECA246G5065 Erigeron canadensis HOM05D002341 ORTHO05D003165 6.8e-29 130.6 82 84.1
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 6.8e-29 130.6 82 84.1
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 6.8e-29 130.6 82 84.1
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 8.9e-29 130.2 82 85.4
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 3.4e-28 128.3 82 84.1
HanXRQChr16g0508791 Helianthus annuus HOM05D002341 ORTHO05D003165 3.4e-28 128.3 82 85.4
Zm00001eb271550 Zea mays HOM05D002341 ORTHO05D003165 3.4e-28 128.3 82 81.7
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 3.4e-28 128.3 82 81.7
Zm00001eb337780 Zea mays HOM05D002341 ORTHO05D003165 9.8e-28 126.7 82 80.5
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 1.7e-27 125.9 80 82.5
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 2.9e-27 125.2 82 79.3
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 4.9e-27 124.4 88 79.5
FvH4_6g43880 Fragaria vesca HOM05D002341 ORTHO05D003165 4.9e-27 124.4 82 81.7
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.9e-27 124.4 82 81.7
AL7G40190 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 1.1e-26 123.2 81 81.5
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 1.8e-26 122.5 82 81.7
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 1.2e-25 119.8 82 76.8
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 2.7e-25 118.6 81 81.5
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 2.7e-25 118.6 81 81.5
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 3.5e-25 118.2 81 80.2
C05p39600 Brassica napus HOM05D002341 ORTHO05D003165 3.5e-25 118.2 81 80.2
Carub.0007s2659 Capsella rubella HOM05D002341 ORTHO05D003165 5.9e-25 117.5 81 77.8
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 1.7e-24 115.9 81 79.0
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 1.7e-24 115.9 81 79.0
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 1.7e-24 115.9 81 79.0
CARHR222120 Cardamine hirsuta HOM05D002341 ORTHO05D003165 2.3e-24 115.5 81 76.5
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 5.0e-24 114.4 81 77.8
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 5.0e-24 114.4 82 72.0
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 1.5e-23 112.8 81 76.5
Eucgr.F03879 Eucalyptus grandis HOM05D002341 ORTHO05D003165 2.8e-22 108.6 65 90.8
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 3.6e-22 108.2 81 72.8
Sc10g0008090 Simmondsia chinensis HOM05D002341 ORTHO05D003165 4.0e-21 104.8 82 72.0
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 3.4e-20 101.7 84 64.3
Prupe.3G223400 Prunus persica HOM05D002341 ORTHO05D003165 2.2e-19 99.0 60 88.3
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 8.3e-19 97.1 56 91.1
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 4.1e-18 94.7 82 65.9
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 4.1e-18 94.7 82 65.9
FAN09G2021 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.6e-17 92.8 74 73.0
vmacro07672 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 2.7e-17 92.0 54 87.0
COL.COLO4_00260 Corchorus olitorius HOM05D002341 ORTHO05D003165 6.0e-17 90.9 55 87.3
Nn7g37322 Nelumbo nucifera HOM05D002341 ORTHO05D003165 5.0e-16 87.8 55 83.6
FAN05G4314 Fragaria x ananassa HOM05D002341 ORTHO05D003165 3.3e-15 85.1 59 79.7
Cfa023699 Carpinus fangiana HOM05D002341 ORTHO05D003165 4.3e-15 84.7 81 58.0
FAN02G2298 Fragaria x ananassa HOM05D002341 ORTHO05D003165 9.9e-12 73.6 50 78.0
Lalb_Chr04g0249401 Lupinus albus HOM05D002341 ORTHO05D003165 1.6e-09 66.2 67 59.7
Nn1g03537 Nelumbo nucifera HOM05D002341 ORTHO05D003165 5.1e-08 61.2 46 73.9
Thhalv10025834m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 8.6e-08 60.5 60 60.0
COL.COLO4_23573 Corchorus olitorius HOM05D002341 ORTHO05D003165 1.5e-07 59.7 42 73.8
RcHm_v2.0_Chr2g0122691 Rosa chinensis HOM05D002341 ORTHO05D003165 5.6e-07 57.8 37 81.1
BraA05t19697Z Brassica rapa HOM05D002341 ORTHO05D003165 9.5e-07 57.0 39 76.9
A05p07320 Brassica napus HOM05D002341 ORTHO05D003165 2.8e-06 55.5 39 74.4
BcaC02g12020 Brassica carinata HOM05D002341 ORTHO05D003165 6.2e-06 54.3 39 74.4
C04p08770 Brassica napus HOM05D002341 ORTHO05D003165 6.2e-06 54.3 39 74.4
BolC4t22469H Brassica oleracea HOM05D002341 ORTHO05D003165 6.2e-06 54.3 39 74.4


User provided reference genes

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