Interactive Phylogenetics Module

Gene Id
Zm00001d023264

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001d023264 Zea mays B73 HOM04x5M004507 ORTHO04x5M005410 4.2e-134 479.9 231 100.0
Sobic.008G017200 Sorghum bicolor HOM04x5M004507 ORTHO04x5M005410 2.3e-124 447.6 229 93.9
Misin15G007600 Miscanthus sinensis HOM04x5M004507 ORTHO04x5M005410 6.7e-124 446.0 229 93.9
Zm00008a036332 Zea mays PH207 HOM04x5M004507 ORTHO04x5M005410 7.4e-123 442.6 242 90.5
Sspon.07G0019960-1A Saccharum spontaneum HOM04x5M004507 ORTHO04x5M005410 5.7e-115 416.4 228 89.5
Sspon.07G0038600-1D Saccharum spontaneum HOM04x5M004507 ORTHO04x5M005410 2.0e-107 391.3 270 75.6
Sspon.07G0019960-1P Saccharum spontaneum HOM04x5M004507 ORTHO04x5M005410 4.4e-107 390.2 247 81.0
LOC_Os11g03794 Oryza sativa ssp. japonica HOM04x5M004507 ORTHO04x5M005410 3.1e-105 384.0 229 79.9
OsR498G1119370400.01 Oryza sativa ssp. indica HOM04x5M004507 ORTHO04x5M005410 3.1e-105 384.0 229 79.9
OsR498G1220875600.01 Oryza sativa ssp. indica HOM04x5M004507 ORTHO04x5M005410 3.8e-103 377.1 229 78.2
LOC_Os12g03540 Oryza sativa ssp. japonica HOM04x5M004507 ORTHO04x5M005410 1.5e-102 375.2 229 77.7
Seita.7G310400 Setaria italica HOM04x5M004507 ORTHO04x5M005410 2.5e-102 374.4 229 79.0
TraesCS5A02G138500 Triticum aestivum HOM04x5M004507 ORTHO04x5M005410 6.1e-101 369.8 229 76.4
Seita.8G003800 Setaria italica HOM04x5M004507 ORTHO04x5M005410 1.0e-100 369.0 230 78.7
OB11G11590 Oryza brachyantha HOM04x5M004507 ORTHO04x5M005410 1.4e-100 368.6 229 76.9
TraesCS5D02G152200 Triticum aestivum HOM04x5M004507 ORTHO04x5M005410 1.8e-100 368.2 229 75.5
HORVU5Hr1G045070 Hordeum vulgare HOM04x5M004507 ORTHO04x5M005410 3.0e-100 367.5 229 75.1
MisinT482300 Miscanthus sinensis HOM04x5M004507 ORTHO04x5M005410 8.9e-100 365.9 190 92.1
Oropetium_20150105_11037 Oropetium thomaeum HOM04x5M004507 ORTHO04x5M005410 3.7e-98 360.5 218 81.7
Sspon.07G0038610-1D Saccharum spontaneum HOM04x5M004507 ORTHO04x5M005410 4.9e-98 360.1 242 78.1
Pgl_GLEAN_10033199 Cenchrus americanus HOM04x5M004507 ORTHO04x5M005410 2.9e-95 350.9 228 75.4
LP033593 Lolium perenne HOM04x5M004507 ORTHO04x5M005410 8.6e-95 349.4 250 67.2
TRITD5Av1G105920 Triticum turgidum HOM04x5M004507 ORTHO04x5M005410 1.1e-86 322.4 229 68.6
TraesCS5B02G138600 Triticum aestivum HOM04x5M004507 ORTHO04x5M005410 2.5e-86 321.2 229 68.1
TRITD5Bv1G088770 Triticum turgidum HOM04x5M004507 ORTHO04x5M005410 2.5e-86 321.2 229 68.1
Sspon.07G0019960-2C Saccharum spontaneum HOM04x5M004507 ORTHO04x5M005410 8.1e-85 316.2 248 68.1
Bradi4g43700 Brachypodium distachyon HOM04x5M004507 ORTHO04x5M005410 4.9e-82 307.0 228 66.7
Ma08_g26840 Musa acuminata HOM04x5M004507 ORTHO04x5M005410 4.1e-73 277.3 229 59.0
evm.TU.AsparagusV1_02.1442.V1.1 Asparagus officinalis HOM04x5M004507 ORTHO04x5M005410 4.3e-70 267.3 234 56.4
OB12G11930 Oryza brachyantha HOM04x5M004507 ORTHO04x5M006219 6.2e-69 263.5 254 56.3
CALSI_Maker00048110 Calamus simplicifolius HOM04x5M004507 ORTHO04x5M005410 1.8e-68 261.9 238 55.9
p5.00_sc00094_p0061 Elaeis guineensis HOM04x5M004507 ORTHO04x5M005410 6.8e-68 260.0 245 53.1
Aco023948 Ananas comosus HOM04x5M004507 ORTHO04x5M005410 2.2e-66 255.0 239 54.4
Potri.016G030400 Populus trichocarpa HOM04x5M004507 ORTHO04x5M005410 7.8e-64 246.5 233 51.9
ASH_gene5141 Apostasia shenzhenica HOM04x5M004507 ORTHO04x5M005410 1.7e-63 245.4 232 53.0
AT3G56900 Arabidopsis thaliana HOM04x5M004507 ORTHO04x5M005410 1.4e-60 235.7 229 50.2
ATR0307G100 Amborella trichopoda HOM04x5M004507 ORTHO04x5M005410 6.4e-58 226.9 238 49.6
Zosma6g00180 Zostera marina HOM04x5M004507 ORTHO04x5M005410 7.3e-54 213.4 232 47.0
Solyc08g036600.1 Solanum lycopersicum HOM04x5M004507 ORTHO04x5M005410 1.2e-51 206.1 207 50.2
Zm00007a00022530 Zea mays B104 HOM04x5M004507 ORTHO04x5M005410 2.3e-47 191.8 106 91.5
GSVIVG01025851001 Vitis vinifera HOM04x5M004507 ORTHO04x5M005410 3.1e-44 181.4 178 52.8
Mapoly0010s0124 Marchantia polymorpha HOM04x5M004507 ORTHO04x5M005410 9.3e-41 169.9 261 39.5
Pp3c11_18220 Physcomitrium patens HOM04x5M004507 ORTHO04x5M005410 9.3e-41 169.9 243 37.4
Zjn_sc00167.1.g00370.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M004507 ORTHO04x5M005410 3.9e-39 164.5 166 54.2
Zjn_sc00067.1.g00340.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M004507 ORTHO04x5M005410 4.1e-36 154.5 134 59.0
Pgl_GLEAN_10009938 Cenchrus americanus HOM04x5M004507 ORTHO04x5M005410 1.1e-33 146.4 102 72.5
OsR498G1220885900.01 Oryza sativa ssp. indica HOM04x5M004507 ORTHO04x5M005410 7.7e-27 123.6 95 63.2
gene10650 Selaginella moellendorffii HOM04x5M004507 ORTHO04x5M005410 1.6e-24 115.9 266 31.6
gene36333 Selaginella moellendorffii HOM04x5M004507 ORTHO04x5M005410 1.6e-24 115.9 266 31.6
PEQU_35849 Phalaenopsis equestris HOM04x5M004507 ORTHO04x5M005410 1.3e-13 79.7 70 44.3
LOC_Os12g03730 Oryza sativa ssp. japonica HOM04x5M000377 ORTHO04x5M000276 4.8e-13 77.8 212 30.7
Pgl_GLEAN_10018462 Cenchrus americanus HOM04x5M004507 ORTHO04x5M005410 3.1e-12 75.1 93 47.3

Amborella trichopoda (1 genes)
Ananas comosus (1 genes)
Apostasia shenzhenica (1 genes)
Arabidopsis thaliana (1 genes)
Asparagus officinalis (1 genes)
Brachypodium distachyon (1 genes)
Calamus simplicifolius (1 genes)
Cenchrus americanus (3 genes)
Chlamydomonas reinhardtii (0 genes)
Elaeis guineensis (1 genes)
Hordeum vulgare (1 genes)
Lolium perenne (1 genes)
Marchantia polymorpha (1 genes)
Micromonas commoda (0 genes)
Miscanthus sinensis (2 genes)
Musa acuminata (1 genes)
Oropetium thomaeum (1 genes)
Oryza brachyantha (2 genes)
Oryza sativa ssp. indica (3 genes)
Oryza sativa ssp. japonica (3 genes)
Phalaenopsis equestris (1 genes)
Phyllostachys edulis (0 genes)
Physcomitrium patens (1 genes)
Picea abies (0 genes)
Populus trichocarpa (1 genes)
Saccharum spontaneum (5 genes)
Selaginella moellendorffii (2 genes)
Setaria italica (2 genes)
Solanum lycopersicum (1 genes)
Sorghum bicolor (1 genes)
Spirodela polyrhiza (0 genes)
Triticum aestivum (3 genes)
Triticum turgidum (2 genes)
Vitis vinifera (1 genes)
Zea mays B73 (1 genes)
Zea mays B104 (1 genes)
Zea mays PH207 (1 genes)
Zostera marina (1 genes)
Zoysia japonica ssp. nagirizaki (2 genes)

Program Settings